Columbia Basin Fish and Wildlife Program Columbia Basin Fish and Wildlife Program
SOW Report
Contract 57342: 2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD (2012)
Project Number:
Title:
IDFG Genetic Monitoring of Snake River Steelhead & Chinook Salmon
BPA PM:
Stage:
Implementation
Area:
Province Subbasin %
Blue Mountain Grande Ronde 20.00%
Imnaha 20.00%
Columbia Plateau Snake Lower 20.00%
Mountain Snake Clearwater 20.00%
Salmon 20.00%
Contract Number:
57342
Contract Title:
2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD (2012)
Contract Continuation:
Previous: Next:
53238: 2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD 2011
  • 61801: 2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD PBT
Contract Status:
Closed
Contract Description:
The goal of this project is to evaluate a new genetic technology, called Parentage Based Tagging (PBT), that should provide a better tool to meet Fish & Wildlife Program objectives associated with marking hatchery stocks, conducting hatchery evaluations and reform, and enforcing salmonid fishery management measures. A large-scale evaluation of this technology was recommended by the Independent Scientific Review Panel and the Independent Scientific Advisory Board in the 2009 tagging report (ISAB/ISRP 2009).  State, tribal and federal agencies in the Snake River basin were uniquely positioned to perform a large-scale proof of concept PBT study for both steelhead and Chinook salmon because most hatchery steelhead and Chinook salmon broodstock spawned in the Snake River basin (WA, OR, and ID) have been genetically sampled since spawn year 2008; significant resources have been dedicated by BPA to the development of powerful and cost-efficient genetic marker sets for both species (Single Nucleotide Polymorphisms-SNPs); and there are sampling programs in place at Bonneville Dam, at Lower Granite Dam, and in tribal and non-tribal fisheries in the mainstem Columbia River and in the Salmon and Clearwater rivers, to sample returning hatchery adults. This project is currently creating the first generation of PBT parental genetic baselines for hatchery steelhead and Chinook salmon in the Snake basin (Ackerman et al 2011). In doing so, it effectively, permanently genetically marks ~12 million smolts, per species, per year. Through 2016, this project will demonstrate the accuracy and utility of this technology for managing wild and hatchery stocks in the basin.  Collaboration with the BPA funded project, 2008-907-00, will ensure that future genetic markers sets used in the Columbia River basin are standardized, providing unprecedented genetic tools for managing salmon and steelhead in the basin, with GSI techniques segregating adult wild runs by stock of origin, and PBT technologies identifying the stock and age of sampled hatchery fish.
Account Type(s):
Expense
Contract Start Date:
07/01/2012
Contract End Date:
06/30/2013
Current Contract Value:
$1,050,000
Expenditures:
$1,050,000

* Expenditures data includes accruals and are based on data through 30-Nov-2024.

Env. Compliance Lead:
Work Order Task(s):
Contract Type:
Contract (IGC)
Pricing Method:
Cost Reimbursement (CNF)
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Full Name Organization Write Permission Contact Role Email Work Phone
Mike (PSMFC) Ackerman Pacific States Marine Fisheries Commission Yes Technical Contact mike.ackerman@idfg.idaho.gov (208) 939-6713
Matthew Campbell Idaho Department of Fish and Game (IDFG) Yes Contract Manager matthew.campbell@idfg.idaho.gov (208) 939-6713
Conan Chiu Idaho Department of Fish and Game (IDFG) No Administrative Contact conan.chiu@idfg.idaho.gov (208) 287-2813
Jeff Dillon Idaho Department of Fish and Game (IDFG) Yes Supervisor jeff.dillon@idfg.idaho.gov (208) 287-2777
Israel Duran Bonneville Power Administration Yes Env. Compliance Lead induran@bpa.gov (503) 230-3967
Eric Grau Idaho Department of Fish and Game (IDFG) No Interested Party ericdgrau@gmail.com (206) 979-7506
Jon Hess Columbia River Inter-Tribal Fish Commission (CRITFC) Yes Interested Party hesj@critfc.org (208) 837-9096x1107
Maureen (CRITFC) Hess Columbia River Inter-Tribal Fish Commission (CRITFC) No Interested Party hesm@critfc.org (503) 731-1318
Paul Krueger Bonneville Power Administration Yes F&W Approver pqkrueger@bpa.gov (503) 230-5723
Jesse McCane Idaho Department of Fish and Game (IDFG) Yes Technical Contact jesse.mccane@idfg.idaho.gov (208) 939-6713
Shawn Narum Columbia River Inter-Tribal Fish Commission (CRITFC) No Interested Party nars@critfc.org (208) 837-9096x1120
William Schrader Idaho Department of Fish and Game (IDFG) No Interested Party bill.schrader@idfg.idaho.gov (208) 465-8404x235
Barbara Shields Bonneville Power Administration Yes COR bashields@bpa.gov (503) 230-4748
Susan Smith Idaho Department of Fish and Game (IDFG) No Administrative Contact susan.smith@idfg.idaho.gov (208) 287-2803
Craig Steele Pacific States Marine Fisheries Commission Yes Technical Contact craig.steele@idfg.idaho.gov (208) 939-6713
Kristi Van Leuven Bonneville Power Administration Yes Contracting Officer kjvleuven@bpa.gov (503) 230-3605


Viewing of Work Statement Elements

Deliverable Title WSE Sort Letter, Number, Title Start End Concluded
Environmental Compliance Documentation B: 165. Environmental Complicance Documentation 07/02/2012 07/02/2012
Funding Package - Submit draft to COTR C: 119. Obj. 1-3, Manage/Adminster Projects 05/31/2013 05/31/2013
Produce Annual Progress Report D: 132. Obj. 1-3, Submit Progress Report for the period (7/1/2012) to (6/30/2013) 06/29/2013 06/25/2013
Submit draft of article for internal review E: 183. Obj. 1-3, Write and submit article on results of PBT studies 06/29/2013 02/28/2013
Communication with agencies F: 189. Obj. 1, Sampling Coordination among agencies 06/29/2013 06/25/2013
Collect tissue samples from all hatchery broodstock G: 157. Obj. 1, Collect tissue samples from hatchery broodstock (Chinook SY2012 and Steelhead SY2013) 06/29/2013 06/25/2013
Inventoried genetic tissue samples H: 157. Obj. 1, Inventory and label all tissues samples 01/02/2013 01/02/2013
Table summarizing total broodstock sampled I: 161. Obj. 1, Summarizing broodstock numbers and sampling information 01/27/2013 01/27/2013
Multi-locus SNP genotypes J: 157. Obj. 2, SNP Genotyping (broodstock)-IDFG 06/01/2013 06/01/2013
Multi-locus SNP genotypes K: 157. Obj. 2, SNP Genotyping (broodstock)-CRITFC 06/01/2013 06/01/2013
Analyze Genetic Data L: 162. Obj. 2, Population diversity and differentiation in baseline 06/15/2013 06/15/2013
Report/Present Genetic Data M: 161. Obj. 2, Genotypes and allele frequencies 06/15/2013 06/15/2013
Upload genotypes to database N: 159. Obj. 2, Baseline genotypes to database 06/15/2013 06/15/2013
Communication and Coordination with agencies O: 156. Obj. 3 Organize back-end projects utilizing PBT 06/29/2013 06/25/2013
Multi-locus SNP genotypes P: 157. Obj. 3, Genotyping (Backend sampling) 01/02/2013 01/02/2013
PBT assignments Q: 162. Obj. 3, Parentage Assignments (Backend sampling) 01/02/2013 01/02/2013
Report/Present Genetic Data R: 161. Obj. 3, Parentage Results and stock/cohort reporting (Backend sampling) 04/13/2013 04/13/2013

Viewing of Implementation Metrics
Viewing of Environmental Metrics Customize

Primary Focal Species Work Statement Elements
Chinook (O. tshawytscha) - Snake River Spring/Summer ESU (Threatened)
  • 1 instance of WE 183 Produce Journal Article
  • 5 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 3 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 2 instances of WE 162 Analyze/Interpret Data
Chinook (O. tshawytscha) - Snake River Spring/Summer (not listed)
  • 1 instance of WE 183 Produce Journal Article
  • 5 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 3 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 2 instances of WE 162 Analyze/Interpret Data
Steelhead (O. mykiss) - Snake River DPS (Threatened)
  • 1 instance of WE 183 Produce Journal Article
  • 5 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 3 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 2 instances of WE 162 Analyze/Interpret Data

Sort WE ID WE Title NEPA NOAA USFWS NHPA Has Provisions Inadvertent Discovery Completed
A 185 Periodic Status Reports for BPA 07/01/2012
B 165 Environmental Complicance Documentation 07/01/2012
C 119 Obj. 1-3, Manage/Adminster Projects 07/01/2012
D 132 Obj. 1-3, Submit Progress Report for the period (7/1/2012) to (6/30/2013) 07/01/2012
E 183 Obj. 1-3, Write and submit article on results of PBT studies 07/01/2012
F 189 Obj. 1, Sampling Coordination among agencies 07/01/2012
G 157 Obj. 1, Collect tissue samples from hatchery broodstock (Chinook SY2012 and Steelhead SY2013) 07/01/2012
H 157 Obj. 1, Inventory and label all tissues samples 07/01/2012
I 161 Obj. 1, Summarizing broodstock numbers and sampling information 07/01/2012
J 157 Obj. 2, SNP Genotyping (broodstock)-IDFG 07/01/2012
K 157 Obj. 2, SNP Genotyping (broodstock)-CRITFC 07/01/2012
L 162 Obj. 2, Population diversity and differentiation in baseline 07/01/2012
M 161 Obj. 2, Genotypes and allele frequencies 07/01/2012
N 159 Obj. 2, Baseline genotypes to database 07/01/2012
O 156 Obj. 3 Organize back-end projects utilizing PBT 07/01/2012
P 157 Obj. 3, Genotyping (Backend sampling) 07/01/2012
Q 162 Obj. 3, Parentage Assignments (Backend sampling) 07/01/2012
R 161 Obj. 3, Parentage Results and stock/cohort reporting (Backend sampling) 07/01/2012