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Columbia Basin Fish and Wildlife Program Columbia Basin Fish and Wildlife Program
SOW Report
Contract 73354 REL 1: 2008-907-00 EXP GENETIC ASSESSMENT OF COLUMBIA RIVER STOCKS

Last Modified: Sharon Grant, 09/20/2017 9:49 AM   
Basics

Project Number:
2008-907-00
Title:
Genetic Assessment of Columbia River Stocks
BPA PM:
Martin Allen
Stage:
Implementation
Area:
Province Subbasin %
Basinwide - 50.00%
Mainstem - 50.00%
Contract Number:
73354 REL 1
Contract Title:
2008-907-00 EXP GENETIC ASSESSMENT OF COLUMBIA RIVER STOCKS
Contract Continuation:
Previous: Next:
75976: 2008-907-00 EXP GENETIC ASSESSMENT OF COLUMBIA RIVER STOCKS
  • 73354 REL 21: 2008-907-00 EXP GENETIC ASSESSMENT OF COLUMBIA RIVER STOCKS
Contract Status:
Closed
Contract Description:
This project combines four inter-related projects from the Accords that address Single Nucleotide Polymorphism (SNP) Discovery, Genetic Baseline Expansion, Genetic Stock Identification (GSI) to Evaluate Catch, and GSI of fishes passing Bonneville Dam.  These four projects are highly related since SNP markers are needed to complete species specific baselines, and these baselines are requisite to complete GSI.  

The specific objectives are:

1) discover and evaluate SNP markers throughout the genome in salmonids and other fishes

2) expand and create genetic baselines for multiple species (Chinook, steelhead, sockeye, and coho)

3) implement GSI/PBT programs for stock ID of mainstem fisheries

4) GSI/PBT  for stock ID of fish passing Bonneville Dam

5) PBT baselines for fall Chinook (additional BiOp objective)

These objectives address needs for distinguishing specific stocks, determining genetic diversity, stock specific run timing, and estimating stock composition to provide information for fisheries management and harvest.  Newly discovered SNP markers may also be useful for other applications such as pedigree studies for estimating reproductive success, and evaluating adaptive divergence of populations to specific environments.
Account Type(s):
Expense
Contract Start Date:
04/01/2018
Contract End Date:
03/31/2019
Current Contract Value:
$800,936
Expenditures:
$800,936

* Expenditures data includes accruals and are based on data through 30-Nov-2024.

BPA CO:
Elham Zolmajd-Haghighi
BPA COR:
Martin Allen
Env. Compliance Lead:
Israel Duran
Contract Contractor:
Columbia River Inter-Tribal Fish Commission (CRITFC) - COLURIVE00
Work Order Task(s):
WO: 00219436, Task: 1
Contract Type:
Release
Pricing Method:
Cost Reimbursement (CNF)
Click the map to see this Contract's location details.

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Contract Contacts

Full Name Organization Write Permission Contact Role Email Work Phone
Martin Allen Bonneville Power Administration Yes COR mballen@bpa.gov (503) 230-5115
Israel Duran Bonneville Power Administration Yes Env. Compliance Lead induran@bpa.gov (503) 230-3967
Christine Golightly Columbia River Inter-Tribal Fish Commission (CRITFC) Yes Administrative Contact golc@critfc.org (503) 731-1288
Heidi Haak Bonneville Power Administration No CO Assistant hlhaak@bpa.gov (541) 922-6856
Douglas Hatch Columbia River Inter-Tribal Fish Commission (CRITFC) No Interested Party hatd@critfc.org (503) 731-1263
Jon Hess Columbia River Inter-Tribal Fish Commission (CRITFC) Yes Technical Contact hesj@critfc.org (208) 837-9096x1107
Shawn Narum Columbia River Inter-Tribal Fish Commission (CRITFC) Yes Contract Manager nars@critfc.org (208) 837-9096x1120
Zachary Penney Columbia River Inter-Tribal Fish Commission (CRITFC) No Supervisor zpenney@critfc.org (503) 731-1301
Chris Roe Columbia River Inter-Tribal Fish Commission (CRITFC) No Administrative Contact chris.roe@critfc.org (503) 731-1274
Christopher Roper Bonneville Power Administration No CO Assistant cproper@bpa.gov (503) 230-3514
Tybee Sheidler Bonneville Power Administration No CO Assistant tasheidler@bpa.gov (503) 230-3820
Dorothy Welch Bonneville Power Administration Yes F&W Approver dwwelch@bpa.gov (503) 230-5479
Elham Zolmajd-Haghighi Bonneville Power Administration Yes Contracting Officer ezolmajd-haghighi@bpa.gov (503) 230-7414


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Statement Of Work (SOW)

Viewing of Work Statement Elements

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Deliverable Status

Deliverable Title WSE Sort Letter, Number, Title Start End Concluded
Effective implementation management and timely contract administration B: 119. Obj. 1-5; Manage/Admin. Projects 03/31/2019 03/18/2019
Obtain Permit C: 165. Obj. 1-5; Environmental Compl. 04/01/2018 04/01/2018
Submit manuscript D: 183. Obj. 1-5; Journal articles 03/31/2019 03/18/2019
Sequencing and Assay development E: 157. Obj. 1) Sequencing and Assay Development 03/31/2019 03/18/2019
Estimate allele frequencies F: 162. Obj. 1) Analysis of SNP Frequencies 03/31/2019 03/18/2019
Report SNP sites G: 161. Obj. 1) SNP Sites and Assays 03/31/2019 03/18/2019
List of SNPs and populations H: 156. Obj. 2) Determine SNP Markers and Baseline Samples 03/31/2019 03/18/2019
Multi-locus SNP genotypes I: 157. Obj. 2) SNP Genotyping 03/31/2019 03/18/2019
Submit to Database J: 159. Obj. 2) Baseline Genotypes to Database 03/31/2019 03/18/2019
Analyze Genetic Data K: 162. Obj. 2) Population Diversity and Differentiation 03/31/2019 03/18/2019
Report/Present Genetic Data L: 161. Obj. 2) Genotypes and Allele Frequencies 03/31/2019 03/18/2019
Sample Plan M: 156. Obj. 3) Develop Sampling Plan 03/31/2019 03/18/2019
Inventory of Samples N: 157. Obj. 3) Collect Tissue Samples from Fisheries 03/31/2019 03/18/2019
Summary of Genotypes O: 157. Obj. 3) Genotype Tissue Samples 03/31/2019 03/18/2019
Stock Composition P: 162. Obj. 3) Estimate Stock Composition 03/31/2019 03/18/2019
Report Stock Composition Q: 161. Obj. 3) Distribute GSI Estimates 03/31/2019 03/18/2019
Sampling plan R: 156. Obj. 4) Sampling period, size, and logistics 03/31/2019 03/18/2019
Inventory of Samples S: 157. Obj. 4) Non-lethal sampling at Bonneville Dam 03/31/2019 03/18/2019
Summary of Genotypes T: 157. Obj. 4) Genotype tissue samples 03/31/2019 03/18/2019
Stock Composition U: 162. Obj. 4) GSI estimates 03/31/2019 03/18/2019
Produce accessible, error-checked datasets V: 157. Obj. 5) PBT genotyping of fall Chinook 03/31/2019 03/18/2019
Completed Annual Report W: 132. Submit Progress Report for the period (1/1/2018) to (12/31/2018) 03/31/2019 03/18/2019
Submit BiOp RPA Report in Taurus X: 202. BiOp RPA Report for CY 2018 03/15/2019 03/15/2019

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Metrics

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Viewing of Environmental Metrics Customize

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Focal Species

Primary Focal Species Work Statement Elements
Chinook (Oncorhynchus tshawytscha) - All Populations
  • 1 instance of WE 183 Produce Journal Article
  • 6 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 3 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 4 instances of WE 162 Analyze/Interpret Data
Chinook (O. tshawytscha) - Snake River Fall ESU (Threatened)
  • 1 instance of WE 157 Collect/Generate/Validate Field and Lab Data
Coho (O. kisutch) - Unspecified Population
  • 6 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 3 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 4 instances of WE 162 Analyze/Interpret Data
Sockeye (Oncorhynchus nerka) - All Populations
  • 1 instance of WE 183 Produce Journal Article
  • 6 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 3 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 4 instances of WE 162 Analyze/Interpret Data
Steelhead (Oncorhynchus mykiss) - All Populations
  • 1 instance of WE 183 Produce Journal Article
  • 6 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 3 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 4 instances of WE 162 Analyze/Interpret Data

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Environmental Compliance

Sort WE ID WE Title NEPA NOAA USFWS NHPA Has Provisions Inadvertent Discovery Completed
A 185 Periodic Status Reports for BPA 04/01/2018
B 119 Obj. 1-5; Manage/Admin. Projects 04/01/2018
C 165 Obj. 1-5; Environmental Compl. 04/01/2018
D 183 Obj. 1-5; Journal articles 04/01/2018
E 157 Obj. 1) Sequencing and Assay Development 04/01/2018
F 162 Obj. 1) Analysis of SNP Frequencies 04/01/2018
G 161 Obj. 1) SNP Sites and Assays 04/01/2018
H 156 Obj. 2) Determine SNP Markers and Baseline Samples 04/01/2018
I 157 Obj. 2) SNP Genotyping 04/01/2018
J 159 Obj. 2) Baseline Genotypes to Database 04/01/2018
K 162 Obj. 2) Population Diversity and Differentiation 04/01/2018
L 161 Obj. 2) Genotypes and Allele Frequencies 04/01/2018
M 156 Obj. 3) Develop Sampling Plan 04/01/2018
N 157 Obj. 3) Collect Tissue Samples from Fisheries 04/01/2018
O 157 Obj. 3) Genotype Tissue Samples 04/01/2018
P 162 Obj. 3) Estimate Stock Composition 04/01/2018
Q 161 Obj. 3) Distribute GSI Estimates 04/01/2018
R 156 Obj. 4) Sampling period, size, and logistics 04/01/2018
S 157 Obj. 4) Non-lethal sampling at Bonneville Dam 04/01/2018
T 157 Obj. 4) Genotype tissue samples 04/01/2018
U 162 Obj. 4) GSI estimates 04/01/2018
V 157 Obj. 5) PBT genotyping of fall Chinook 04/01/2018
W 132 Submit Progress Report for the period (1/1/2018) to (12/31/2018) 04/01/2018
X 202 BiOp RPA Report for CY 2018

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Reports


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