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Columbia Basin Fish and Wildlife Program Columbia Basin Fish and Wildlife Program
SOW Report
Contract 73354 REL 9: 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION

Last Modified: Sharon Grant, 09/20/2017 9:56 AM   
Basics

Project Number:
2009-005-00
Title:
Influence of Environment and Landscape on Salmonid Genetics
BPA PM:
Martin Allen
Stage:
Closed
Area:
Province Subbasin %
Basinwide - 100.00%
Contract Number:
73354 REL 9
Contract Title:
2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION
Contract Continuation:
Previous: Next:
76573: 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION
Contract Status:
History
Contract Description:
Environmental and landscape features can greatly contribute to population structure, life history diversification, and adaptation of salmonids.  This proposal combines two projects from the Fish & Wildlife Program Accords with the following objectives:

1) Landscape Genetics/Genomics - determine correlation of watershed characteristics such as elevation, barriers, migration distance, and temperature to genetic structure of Chinook & sockeye salmon and steelhead populations.

2) Expression of Traits - test for association of SNPs and gene expression results with traits of interest (i.e., smoltification, thermal tolerance, disease resistance, run timing, age-at-maturity) that are related to recovery of steelhead, Chinook & sockeye salmon populations.  Evaluate candidate genes in a broad range of populations to quantify adaptive variation and local adaptation.
Account Type(s):
Expense
Contract Start Date:
07/01/2018
Contract End Date:
03/31/2019
Current Contract Value:
$134,494
Expenditures:
$134,494

* Expenditures data includes accruals and are based on data through 30-Nov-2024.

BPA CO:
Elham Zolmajd-Haghighi
BPA COR:
Martin Allen
Env. Compliance Lead:
Israel Duran
Contract Contractor:
Columbia River Inter-Tribal Fish Commission (CRITFC) - COLURIVE00
Work Order Task(s):
WO: 00226829, Task: 1
Contract Type:
Release
Pricing Method:
Cost Reimbursement (CNF)
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Contract Contacts

Full Name Organization Write Permission Contact Role Email Work Phone
Martin Allen Bonneville Power Administration Yes COR mballen@bpa.gov (503) 230-5115
Israel Duran Bonneville Power Administration Yes Env. Compliance Lead induran@bpa.gov (503) 230-3967
Christine Golightly Columbia River Inter-Tribal Fish Commission (CRITFC) No Administrative Contact golc@critfc.org (503) 731-1288
Heidi Haak Bonneville Power Administration No CO Assistant hlhaak@bpa.gov (541) 922-6856
Jon Hess Columbia River Inter-Tribal Fish Commission (CRITFC) No Technical Contact hesj@critfc.org (208) 837-9096x1107
Kristen Jule Bonneville Power Administration Yes F&W Approver krjule@bpa.gov (503) 230-3588
Steven Micheletti Columbia River Inter-Tribal Fish Commission (CRITFC) No Technical Contact mics@critfc.org (208) 837-9096x1138
Shawn Narum Columbia River Inter-Tribal Fish Commission (CRITFC) Yes Contract Manager nars@critfc.org (208) 837-9096x1120
Zachary Penney Columbia River Inter-Tribal Fish Commission (CRITFC) No Supervisor zpenney@critfc.org (503) 731-1301
Christopher Roper Bonneville Power Administration No CO Assistant cproper@bpa.gov (503) 230-3514
Tybee Sheidler Bonneville Power Administration No CO Assistant tasheidler@bpa.gov (503) 230-3820
Elham Zolmajd-Haghighi Bonneville Power Administration Yes Contracting Officer ezolmajd-haghighi@bpa.gov (503) 230-7414


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Statement Of Work (SOW)

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Deliverable Status

Deliverable Title WSE Sort Letter, Number, Title Start End Concluded
Effective implementation management and timely contract administration B: 119. Obj. 1 & 2) Project Management 03/31/2019
Environmental Compliance C: 165. Obj. 1 & 2) EC 07/01/2018 07/01/2018
Manuscript D: 183. Obj. 1 & 2) Publication 03/31/2019
List of Landscape and Genetic Variables E: 156. Obj. 1) Determine Landscape and Genetic Variables 03/31/2019
Genotypes and Environmental/Landscape Data collected F: 157. Obj. 1) Gather Landscape and Genetic Data 03/31/2019
Statistical Analyses G: 162. Obj. 1) Landscape Genetics Analyses/Correlation 03/31/2019
Plan for analysis H: 156. Obj. 2) Sampling Plan and SNP Analysis 03/31/2019
Inventory Tissue Samples I: 157. Obj. 2) Tissue Sampling 03/31/2019
Allele Frequencies J: 157. Obj. 2) Quantify SNP Frequencies 03/31/2019
Analyzed Data: Association of SNPs and Gene Expression K: 162. Obj. 2) Genes Associated with Traits 03/31/2019
Completed Annual Report L: 132. Obj. 1 & 2) Submit Progress Report for calendar year 2018 03/31/2019
Submit BiOp RPA Report in Taurus M: 202. BiOp RPA Report for CY 2018 03/15/2019 03/18/2019

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Metrics

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Viewing of Environmental Metrics Customize

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Focal Species

Primary Focal Species Work Statement Elements
Chinook (Oncorhynchus tshawytscha) - All Populations
  • 1 instance of WE 183 Produce Journal Article
  • 3 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 162 Analyze/Interpret Data
Steelhead (Oncorhynchus mykiss) - All Populations
  • 1 instance of WE 183 Produce Journal Article
  • 3 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 162 Analyze/Interpret Data
Trout, Interior Redband (O. mykiss gairdnerii)
  • 1 instance of WE 183 Produce Journal Article
  • 3 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 162 Analyze/Interpret Data

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Environmental Compliance

Sort WE ID WE Title NEPA NOAA USFWS NHPA Has Provisions Inadvertent Discovery Completed
A 185 Periodic Status Reports for BPA 07/01/2018
B 119 Obj. 1 & 2) Project Management 07/01/2018
C 165 Obj. 1 & 2) EC 07/01/2018
D 183 Obj. 1 & 2) Publication 07/01/2018
E 156 Obj. 1) Determine Landscape and Genetic Variables 07/01/2018
F 157 Obj. 1) Gather Landscape and Genetic Data 07/01/2018
G 162 Obj. 1) Landscape Genetics Analyses/Correlation 07/01/2018
H 156 Obj. 2) Sampling Plan and SNP Analysis 07/01/2018
I 157 Obj. 2) Tissue Sampling 07/01/2018
J 157 Obj. 2) Quantify SNP Frequencies 07/01/2018
K 162 Obj. 2) Genes Associated with Traits 07/01/2018
L 132 Obj. 1 & 2) Submit Progress Report for calendar year 2018 07/01/2018
M 202 BiOp RPA Report for CY 2018

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Reports


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