Close Message
CBFish website will be offline between 5:00 PM and 6:00 PM today for regular maintenance. Thank you for your patience.
Columbia Basin Fish and Wildlife Program Columbia Basin Fish and Wildlife Program
SOW Report
Contract 63516: 1998-016-00 EXP IMPLEMENT EMAP IN JOHN DAY SUBBASIN
Project Number:
Title:
Escapement and Productivity of Spring Chinook and Steelhead
BPA PM:
Stage:
Closed
Area:
Province Subbasin %
Columbia Plateau John Day 100.00%
Contract Number:
63516
Contract Title:
1998-016-00 EXP IMPLEMENT EMAP IN JOHN DAY SUBBASIN
Contract Continuation:
Previous: Next:
59806: 1998-016-00 EXP IMPLEMENT EMAP IN JOHN DAY SUBBASIN
  • 66581: 1998-016-00 EXP IMPLEMENT EMAP IN JOHN DAY SUBBASIN
Contract Status:
Closed
Contract Description:
A coordinated approach to the monitoring and evaluation of status and trends in anadromous and resident salmonid populations and their habitats is needed to support restoration efforts in the Columbia River basin.  Currently in the John Day River subbasin, independent research projects and some monitoring activities are conducted by various state and federal agencies, tribes, and to some extent by watershed councils or landowners, but there is no overall framework for coordination of efforts or for interpretation and synthesis of results.  This project extends the structure and methods employed by the Oregon Plan for Salmon and Watersheds Monitoring Program to the John Day River subbasin of the Columbia Plateau Province.  This approach, successfully implemented in Oregon's coastal watersheds, applies a rigorous, Tier-2 sampling design to answer key monitoring questions, provides integration of sampling efforts, and has grea... tly improved coordination among state, federal, and tribal governments, along with local watershed groups.  This project is high priority based on the high level of emphasis the NWPPC Fish and Wildlife Program, Subbasin Summaries, NOAA Fisheries, and the Oregon Plan for Salmon and Watersheds have placed on monitoring and evaluation to provide the real-time data to guide restoration and adaptive management in the region.

The John Day River Basin is a pilot study subbasin and information derived from this project will quantify the current status and future trends in fish populations in this important basin.  Further, NOAA Fisheries has specifically identified the Upper John Day as a priority subbasin to receive immediate attention for habitat and species recovery for the Mid-Columbia steelhead distinct population segment (DPS).  The John Day River, together with its anadromous fish populations is also an important reference subbasin for comparisons to other anadromous stocks in more highly impacted subbasins of the Columbia River (Schaller et al. 1999, 2007).  Mid-Columbia spring Chinook are not a federally listed DPS.  However, the population(s) in the John Day River are not supplemented with hatchery releases, have a long history of monitoring, and are relied upon as a reference for comparisons to listed stocks.

There is near universal support in the scientific and regulatory community regarding the critical role of monitoring to assure accountability, adaptive learning, and the credibility of recovery efforts for native salmonids and the watersheds that support them.  When the Oregon Plan for Salmon and Watersheds was developed for coastal watersheds, monitoring was one of the four primary elements of the Plan.  The conceptual framework and the programs that support the Oregon Plan Monitoring Program were critically reviewed and strongly supported by State, Federal, Tribal, and Non-Governmental experts, along with the State of Oregon’s Independent Multidisciplinary Scientific Team prior to implementation.  The Plan received high marks for the comprehensive, integrated, and coordinated approach the State has taken to monitoring the effectiveness of the Oregon Plan.

The program described in this contract is consistent with and supports the monitoring needs specified by the amended NWPPC’s Columbia Basin Fish and Wildlife Program and Subbasin Summaries, NMFS 2000/04 FCRPS Biological Opinion(s), and the Oregon Plan for Salmon and Watersheds.  The Fish and Wildlife Program (Chapter 9) calls for monitoring and evaluation of biological and environmental conditions at the scale of provinces and subbasins.  The John Day subbasin plan calls for a framework for the coordination and integration of monitoring efforts, increased monitoring of the status trends in anadromous and resident fish populations and habitats, and a process to prioritize how and where restoration and protection efforts are focused.  This monitoring program will provide a framework for improved coordination and integration of monitoring efforts.  ODFW will monitor and evaluate the status and trends in fish populations (abundance and distribution) and habitat (quantity and quality) at the subbasin and population scales.  The purpose of the monitoring and evaluation program is to assure that the effects of actions taken under subbasin plans are measured, that these measurements are analyzed so that we have better knowledge of the effects of the action, and that this improved knowledge is used to choose future actions.  ODFW will implement a watershed prioritization process to delineate priority watersheds for increased habitat protection and/or accelerated habitat restoration.  The probabilistic (GRTS) sampling described in this proposal is strongly supported by recent ISRP reviews.

The proportion of hatchery-origin stray (PHOS) steelhead spawners in the John Day River basin is of increasing concern for regional managers (Carmichael & Taylor 2009).  The proportion of out-of-basin strays in a mixed spawning aggregation with natural-origin fish has been shown to be detrimental to population productivity in steelhead populations in Oregon (Chilcote 2003).  Recent observations on spawning grounds have indicated that up to 30-50% of spawners in some tributaries of the John Day are composed of hatchery origin strays.  Similarly, information from an in-stream PIT tag antenna array on the John Day River indicates similar proportions of hatchery-origin steelhead entering the subbasin.  This data suggests a considerable proportion of some John Day populations may be composed of hatchery-origin adults potentially reducing productivity through genetic introgression and/or reproductive interference.  An objective of this study is therefore, to analyze genetic data that allows an objective determination of the population(s) structure of steelhead within the basin together with a measure of introgression from out-of-basin strays.  After consultation with NOAA geneticists, populations will be characterized using a suite of nuclear DNA markers, including microsatellite loci (variable-number simple-sequence repeats) assayed via restriction enzyme analysis.  Endemic stock structure, based on this genetic information, will be used to guide the development of conservation measures.

Another goal of this project is to further develop and implement a standard set of fish habitat monitoring methods in the John Day River subbasin.  We will cooperate with the Integrated Status and Effectiveness Monitoring (ISEMP) group to refine and implement these developing protocols.  This fish habitat monitoring has been developed to capture habitat features that drive fish population biology and the 26 watersheds chosen throughout the Columbia River basin maximize the contrast in current habitat conditions and also represent a temporal gradient of expected change in condition through planned habitat actions.  The data from this project will be used to evaluate the quantity and quality of tributary fish habitat available to salmonids across the Columbia River basin.  When combined with parallel fish monitoring metrics from related projects, these data will also be used assess the impact of habitat management actions on fish population processes.  The habitat status and trends monitoring proposed in the Columbia Habitat Monitoring Program (CHaMP) is a Columbia River basin wide habitat status and trends monitoring program built around a single habitat monitoring protocol (a protocol being a set of methods and associated metrics), with a program-wide approach to data collection and management.  This program will result in systematic habitat status and trends information that will be used to assess basin-wide habitat condition and correlated with biological response indicators to evaluate habitat management strategies.


References:

Carmichael, R.W. and B.J. Taylor. 2009. Conservation and Recovery Plan for Oregon Steelhead Populations in the Middle Columbia River Steelhead Distinct Population Segment.

Chilcote, M.W. 2003. Relationship between natural productivity and the frequency of wild fish in mixed spawning populations of wild and hatchery steelhead (Oncorhynchus mykiss). Canadian Journal of Fisheries and Aquatic Sciences. 60:1057-1067.
  
Account Type(s):
Expense
Contract Start Date:
10/01/2013
Contract End Date:
09/30/2014
Current Contract Value:
$625,324
Expenditures:
$625,324

* Expenditures data includes accruals and are based on data through 28-Feb-2025.

Env. Compliance Lead:
Work Order Task(s):
Contract Type:
Contract (IGC)
Pricing Method:
Cost Reimbursement (CNF)
MarkerMarkerMarkerMarkerMarkerMarker
20 km
10 mi
Click the map to see this Contract's location details.

No photos have been uploaded yet for this Contract.

Viewing 13 of 13 Work Statement Elements
Sort Order
WSEV ID
WE ID
Work Element Name
Title
Description
WSE Effective Budget
% of Total WSE Effective Budget
WSE Start
WSE End
A121442165Produce Environmental Compliance DocumentationProvide ESA Regulatory Clearances to BPAAuthorization for take of listed species under 4(d) rule for steelhead and Section 6 for bull trout.$2,5000.40%10/01/201309/30/2014
B121443157Collect/Generate/Validate Field and Lab DataSteelhead Spawner SurveysConduct steelhead spawning ground surveys to estimate steelhead escapement for a single population in the John Day River basin. Adult steelhead redd surveys will be conducted from March 1 - June 25 annually based on standard ODFW methods for conducting steelhead redd surveys (Susac and Jacobs, 1999; Jacobs et al., 2000; Jacobs et al., 2001). Twenty to thirty sites will be selected and are visited every two weeks throughout the season to quantify the cumulative redd count at each site. Surveyors will sample upstream from the downstream end of each survey reach. Each surveyor counts live fish and determines the fin-mark status of all live fish through observations. All redds are counted and flagged. A representative subsample reach will be visited at a greater frequency to validate bi-weekly redd enumeration. Redds with spawners present will also be measured to develop a database of redd size for each life history strategy.$180,00028.79%10/01/201307/31/2014
C121444162Analyze/Interpret DataEstimate Fish MetricsData from field surveys will be compiled to provide population metrics of steelhead status. Quantitative metrics include estimates of adult spawner escapement and redd density estimates.$77,00012.32%10/01/201309/30/2014
D121445161Disseminate Raw/Summary Data and ResultsProfessional PresentationsPresent summary data and results at American Fisheries Society and regional planning meeting(s). This is not funded by BPA but is entered to demonstrate the opportunity that the data provides for those interested and involved in fish monitoring.$1,2000.19%11/01/201305/31/2014
E121446162Analyze/Interpret DataEstimate Genetic Composition of Steelhead PopulationsEstimation of structure and hatchery introgression of steelhead populations in the John Day River subbasin. Current life history and geographical information identifies 5 steelhead populations in the John Day River subbasin. Proper identification of the population structure is crucial for future management. Genetic information has yet to be fully used to support current conclusions concerning population structure and degree of hatchery introgression within these populations. We will continue our collaboration with NOAA geneticists.$5,7000.91%10/01/201302/28/2014
F121447157Collect/Generate/Validate Field and Lab DataJuvenile Steelhead Density MetricsConduct representative juvenile fish surveys throughout steelhead distribution in the John Day River basin. Surveys to be representative of one of the five recognized populations in the basin. Juvenile sampling protocols for the 2014 sampling season will follow recommendations of ISEMP group and will be tied to CHaMP monitoring reaches.$89,00014.23%10/01/201309/30/2014
G121448157Collect/Generate/Validate Field and Lab DataSteelhead Habitat Metrics using CHaMP Habitat ProtocolIn support of habitat restoration, rehabilitation and conservation action performance assessments and adaptive management requirements of the 2008 FCRPS Biological Opinion (BiOp), the Bonneville Power Administration is working with NOAA and other regional fish management agencies to monitor status and trends of fish habitat for each major population group (MPG) in the Pacific Northwest identified through the Endangered Species Act (ESA). BPA is adopting a standardized fish habitat monitoring protocol, the Columbia Habitat Monitoring Program (CHaMP) for the Columbia River Basin monitoring programs. CHaMP is a Columbia River basin-wide habitat status and trends monitoring program built around a single habitat monitoring protocol with a program-wide approach to data collection and management. CHaMP will capture habitat features that drive fish population biology and will result in systematic habitat status and trends information that will be used to assess basin-wide habitat condition and correlated with biological response indicators to evaluate habitat management strategies. BPA is implementing CHaMP in at least one population within each steelhead and Chinook MPG which has, or will have, fish in-fish out monitoring. The goal of this work element is to conduct representative habitat surveys throughout steelhead distribution in the John Day River basin. Surveys will be representative of two selected populations of the five recognized in the basin. The data from this project will be used to evaluate the quantity and quality of tributary fish habitat available to salmonids across the Columbia River basin. When combined with parallel fish monitoring metrics from related projects, these data will also be used to assess the impact of habitat management actions on fish population processes.$184,23429.47%10/01/201309/30/2014
H121449159Transfer/Consolidate Regionally Standardized DataDeliver Habitat Data to CHaMP Data SystemIn a regionally coordinated monitoring strategy that has multiple groups collecting data, such as the CHaMP, it is critical to have data accessible and available for use by all groups within and outside the program. The CHaMP data system provides an online website for loading field data and serves as a long-term storage facility for datasets including metadata. The CHaMP data system features online interfaces for searching, viewing, and downloading datasets and documents associated with the coordinated monitoring program. www.champmonitoring.org$12,0001.92%05/01/201409/30/2014
I121450122Provide Technical Review and RecommendationContribute to and Review CHaMP Annual Synthesis ReportThe CHaMP Lead Coordinator (Mike Ward, Terraqua) will work with collaborators to produce a logistics/lessons learned annual synthesis report for the CHaMP 2014 field season. This “lessons learned” annual report will be used to inform implementation in 2015, including any adjustments that may be appropriate on the design or scope of the project. The CHaMP Annual Synthesis report will: a) provide regular synthesis and reporting of habitat status results b) compare these results to available fish status and trend information c) inform adaptive management improvements for CHaMP, including comparison with other similar efforts such as PIBO and Washington State monitoring protocols with the goal of achieving use of fewer key parameters, greater efficiencies and lower costs; d) support Action Agencies requirements for the 2013/2016 Comprehensive Evaluations; and e) be written to inform agency and tribal decision-makers and specifically address key management questions and decisions.$5,0000.80%09/03/201409/30/2014
J122968185Produce CBFish Status ReportPeriodic Status Reports for BPAThe Contractor shall report on the status of milestones and deliverables in Pisces. Reports shall be completed either monthly or quarterly as determined by the BPA COTR. Additionally, when indicating a deliverable milestone as COMPLETE, the contractor shall provide metrics and the final location (latitude and longitude) prior to submitting the report to the BPA COTR.$6720.11%01/01/201409/30/2014
K121451132Produce Progress (Annual) ReportRM&E Technical ReportEach annual report will be organized as follows: Abstract Introduction Description of project area Materials and methods Results and discussion of results by objective Summary and conclusions Appendices of supplemental information$62,4289.98%10/01/201306/14/2014
L123526141Produce Other ReportsBiOp RPA ReportSubmit BiOp RPA Report in Taurus for Calendar Year 2013. Projects that have claimed that they support one or more RM&E RPAs (i.e., RPAs 50-73) under the FCRPS BiOp are required to report their results. To facilitate the summary of these results across the entire Columbia River Basin, and to provide more clarity as to the format required under the BiOp, separate BiOp reports are now required to be completed online. If desired, the required information can be prepared in MS Word, and be pasted into Taurus. The online BiOp RPA report in Taurus (https://www.cbfish.org) should include the data, analyses, and data management completed by your project by December 31st. Any activity after the last day of the Calendar Year should be included in a subsequent BiOp report. For example, if you have completed redd surveys, but have not completed the analyses, you will report the preliminary data (# of redds). You do not need to rush your analyses; they may be reported in the subsequent RPA report. For each RPA, follow the directions in Taurus for each of the three sections and, as appropriate, input graphical or tabular data, accompanied by explanatory text. These are cumulative summary reports and should show relevant results for the life of your project. Each year, note trends and whether they are changing from one year (or groups of years) to the next.$3,0000.48%10/01/201304/15/2014
M121452119Manage and Administer ProjectsSOW and Budget for FY 2015Draft and Final Scope of work and budget and property inventory for contract renewal.$2,5000.40%07/01/201409/30/2014
      
$625,234
   

Deliverable Title WSE Sort Letter, Number, Title Start End Concluded
NEPA/ESA Compliance A: 165. Provide ESA Regulatory Clearances to BPA 02/14/2014 01/31/2014
Steelhead Spawner Surveys B: 157. Steelhead Spawner Surveys 07/31/2014 07/11/2014
Fish Metrics Estimates C: 162. Estimate Fish Metrics 09/30/2014 09/26/2014
AFS Presentation D: 161. Professional Presentations 05/31/2014 02/28/2014
Genetic Characterization E: 162. Estimate Genetic Composition of Steelhead Populations 02/28/2014 02/28/2014
Juvenile Density F: 157. Juvenile Steelhead Density Metrics 09/30/2014 09/26/2014
CHaMP Habitat Data from 30-40 Sites in the John Day Subbasin G: 157. Steelhead Habitat Metrics using CHaMP Habitat Protocol 09/30/2014 09/25/2014
Metric Generation and End of Season Quality Assurance Review H: 159. Deliver Habitat Data to CHaMP Data System 09/30/2014 09/26/2014
Contribute to and Review CHaMP Annual Lessons Learned/Synthesis Report I: 122. Contribute to and Review CHaMP Annual Synthesis Report 09/30/2014 09/26/2014
RM&E Technical Report K: 132. RM&E Technical Report 04/30/2014 04/18/2014
BiOp RPA Report L: 141. BiOp RPA Report 04/15/2014 04/15/2014
Contract Documents for New Performance Period M: 119. SOW and Budget for FY 2015 07/31/2014 07/30/2014

Viewing of Implementation Metrics
Loading...
Sort Order
WE ID
Work Element Name
Title
Description
Metric ID
Metric
End Fiscal Year
Planned
Actual
Contractor Comments
All Measures
Annual Progress Report Measures
Populations
Viewing of Environmental Metrics Customize
Loading...
WSE ID
WSE Start
WSE End
WE ID
Title
WSE Progress
Study Plan
Protocol
Category
Subcategory
Focus 1
Focus 2
Specific Metric Title

Primary Focal Species Work Statement Elements
Steelhead (O. mykiss) - Middle Columbia River DPS (Threatened)
  • 1 instance of WE 122 Provide Technical Review and Recommendation
  • 3 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 1 instance of WE 161 Disseminate Raw/Summary Data and Results
  • 2 instances of WE 162 Analyze/Interpret Data

Sort WE ID WE Title NEPA NOAA USFWS NHPA Has Provisions Inadvertent Discovery Completed
A 165 Provide ESA Regulatory Clearances to BPA 10/01/2013
B 157 Steelhead Spawner Surveys 08/28/2013
C 162 Estimate Fish Metrics 10/01/2013
D 161 Professional Presentations 10/01/2013
E 162 Estimate Genetic Composition of Steelhead Populations 10/01/2013
F 157 Juvenile Steelhead Density Metrics 11/01/2013
G 157 Steelhead Habitat Metrics using CHaMP Habitat Protocol 10/01/2013
H 159 Deliver Habitat Data to CHaMP Data System 10/01/2013
I 122 Contribute to and Review CHaMP Annual Synthesis Report 10/01/2013
J 185 Periodic Status Reports for BPA 10/01/2013
K 132 RM&E Technical Report 10/01/2013
L 141 BiOp RPA Report 10/01/2013
M 119 SOW and Budget for FY 2015 10/01/2013