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Columbia Basin Fish and Wildlife Program Columbia Basin Fish and Wildlife Program
SOW Report
Contract 96518: 2007-397-00 EXP JOHN DAY TRIB/PASS & FLOW
Project Number:
Title:
John Day Watershed Restoration
BPA PM:
Stage:
Implementation
Area:
Province Subbasin %
Columbia Plateau John Day 100.00%
Contract Number:
96518
Contract Title:
2007-397-00 EXP JOHN DAY TRIB/PASS & FLOW
Contract Continuation:
Previous: Next:
n/a
Contract Status:
Issued
Contract Description:
The John Day is the nation’s second longest free-flowing river in the contiguous United States and the longest containing entirely un-supplemented runs of anadromous fish. Located in eastern Oregon, the basin drains over 8,000 square miles, Oregon's fourth largest drainage basin, and incorporates portions of eleven counties. Originating in the Strawberry Mountains near Prairie City, the John Day River flows 284 miles in a northwesterly direction, entering the Columbia River approximately four miles upstream of the John Day dam. With wild runs of spring Chinook salmon and summer steelhead, westslope cutthroat, and redband and bull trout, the John Day system is truly a basin with national significance.

The John Day River basin is within the CTWS ceded lands and supporting restoration efforts such as this project is an important part of maintaining cultural foods and fish populations. The mission of the CTWS Branch of Natural Resources Fisheries D... epartment is to provide fisheries populations at harvestable levels for tribal members using information gained from research, management, production, and habitat programs while exercising co-management authority across ceded lands and usual and accustomed stations. In 1997, the Tribes established an office in the basin to coordinate restoration projects, monitoring, planning and other watershed activities on private and public lands. Once established, the John Day Basin Office formed partnerships with local agencies and stakeholders to implement restoration actions.

The goal of this project is to address limiting factors by implementing restoration actions that protect and restore passage, flow, and habitat for anadromous fish and listed species in the John Day River Basin. This includes the use of the John Day Basin Watershed Restoration Strategy to assist the Confederated Tribes of Warm Springs (CTWS), John Day Watershed Restoration Program with the ability to focus on implementing suites of restoration actions that will more effectively address priority-limiting factors.

The CTWS John Day River Watershed Restoration Strategy (2014) prioritized geographic areas with the greatest restoration potential for focal fish species, these areas were identified based on a synthesis of analytical results from the Ecosystem Diagnostic and Treatment model, Qualitative Habitat Assessments, and Technical Team review. Watersheds are delineated with a Restoration Potential Benefit (RPB) score along the range of low potential (0) to high potential (9). Within the Strategy, the target and focused restoration actions were identified for each Subbasin to have the most impact in addressing limiting factors.

In addition to Tribal Strategy, CTWS worked as part of the John Day Basin Partnership to collaboratively analyze the most current biological and physical habitat data to prioritize sub-watersheds within the John Day Basin and rank restoration opportunities within those watersheds.  The Partnership's Prioritization utilized the Atlas Framework to determined tier I, II, and III priority areas and prioritized hundreds of restoration opportunities within these watersheds. The goals are to assist partners to implement projects that will address the highest priority limiting habitat factors to benefit the limiting life stages for focal species within the basin.

JOHN DAY PARTNERSHIP PROGRAM SUMMARY
The John Day Basin Partnership – CTWS is one of 28 organizations signed onto a Memorandum of Understanding.  CTWS continues to be an active member of the Partnership in regular coordination meetings and project specific collaborations for restoration planning, design, and implementation. The Partnership was awarded funding through OWEB’s Focused Investment Partnership (FIP) program in 2019 for 6 years of funding focused on native fish habitat. The Partnership uses the Atlas framework for prioritization of both native fish habitat and uplands restoration. As the FIP lifecycle comes to a close in 2025, the Partnership is taking the opportunity to evaluate restoration successes over the last 6 years and begin preparation for future FIP applications. This will involve updating the current ATLAS prioritization to reflect work completed since 2019, as well as updating and re-writing the Partnership’s Strategic Action Plan as necessary. Outputs of these efforts will include the selection of future watershed priorities and focal areas and subsequently seeking funding to continue to drive collaborative restoration in those areas.

RESTORATION PROJECT DEVELOPMENT
Recent, successful completion of several large scale, complex restoration projects demonstrate the evolution John Day Basin program. The ecological trajectory of these projects provide ongoing insight into restoration ecology, collective learning, as well project effectiveness monitoring which will be important to ensure their long-term, ecological success. Information from these efforts will also inform the planning and design of future project opportunities in the basin.  Partners continue to build off previous efforts and are worth tracking including the importance of increased habitat productivity in Lower Basin at 30 mile creek and re-emerging habitat patches at Murderer’s Creek in South Fork basin. This contract will support the continuation of a Hydrologic Assessment lead by Gilliam SWCD and Oregon State that will lead to increase understanding of groundwater/surface water interactions. Findings of this initiative will inform additional restoration opportunities to ensure success of long-standing effort to increase habitat complexity and floodplain connectivity.

The complexity of managing the scale projects at this scale requires creative planning and partnership building to leverage a diversity of financial resources to successfully implement restoration measures. This will also bolster long-term resiliency needs of project sites to manage uncertainty associated with climate change. Specific threats from fire and changes to hydrologic patterns increases the importance of larger floodplain reconnection project types along with other project elements such as strategic native planting and channel design.


MONITORING PROGRAM UPDATES
Structured Implementation and Monitoring (SIM) Framework - this is a joint effort between CTWS and ODFW to focus restoration and monitoring that will guide our efforts in the future. 2019 - 2022 covered the original implementation timeline in the Middle Fork Subbasin, but several projects will continue to be in-design for this contract. Results have been summarized both in the MFIMW 15-year IMW summary report and have resulted in one publication to date (Watershed-scale dispersal patterns of juvenile Chinook Salmon (Oncorhyncus tshawytscha) revealed through genetic parentage analysis, Kaylor et al. 2024). Results from this effort have provided critical data for assessing previous work and prioritizing future efforts in the MFJDR. Additional SIM efforts in collaboration with ODFW and CRITFC are in development and are largely supported through PCSRF funds.

The Upper John Day River was the intended focal watershed for the SIM framework during the 2023 – 2026 implementation window. However, prioritization of restoration in the MFJDR as a result of JDBP FIP funding has resulted in an extended implementation window within the watershed. This, combined with challenges in designing and implementing restoration in the UJDR, has shifted the SIM timeline to reflect ongoing efforts. CTWS continues to coordinate closely with ODFW and future SIM timelines and focal areas will be adapted to JDBP partnership priorities, focal areas, and funding opportunities.

Monitoring and Adaptive Management Plans (MAMPS) have been developed for previously implemented projects (Vincent to Vinegar, Fox Creek) and have been completed or are in progress for projects currently in design (Oxbow Phase 6, Phipps Meadow, MSFCA Restoration). CTWS staff continue to collect pre or post-implementation data for these MAMPS and summarize results annually to assess restoration success, identify adaptive management opportunities, and inform future projects.

SUMMARY OF STATEMENT OF WORK
Project Design and Implementation
5 projects will be moving forward with next level of project design including 9 slated for final design and implementation in 2025.
Design projects are summarized here by region:

Fox Creek Reach 9
Middle Fork-Caribou Creek Reconnection
Middle Fork-Oxbow Phase 6
Middle Fork-Dunstan Preserve Floodplain Enhancement
Middle Fork-Holmes Diversion Replacement and Habitat Restoration
Middle Fork-Granite Creek Culvert Design
Middle Fork-Phipps Meadown Habitat Enhancement Design
Middle Fork-Deep Creek Final Design
Middle Fork-Bates Pond Reconnection
Upper John Day-Belshaw Creek Diversion Consolidation and Irrigation Efficiency
Upper John Day-Mainstem Forest Conservation Area
Upper John Day-Indian Creek Diversion
Conservation Properties Tributaries, Low-Tech, Processed Based
Lower John Day-Rock Creek Diversion
South Fork-Aldritch Mountain Low Tech, Processed Based

Total implementation schedule for 2025 this contract supports in collaboration with John Day partners include the following projects:
-Caribou Phase I
-Oxbow Phase 6
-Belshaw Passage Improvement and Streamflow Enhancement, Phase I
-Upper Cottonwood Phase I and II
-Deep Creek Barrier Removal
-Hay Creek Planting
-Battle Creek Juniper Removal
-Mainstem Forest Conservation Area Juniper Removal
-Phipps Meadow Restoration







  
Account Type(s):
Expense
Contract Start Date:
02/06/2025
Contract End Date:
01/31/2026
Current Contract Value:
$2,907,575
Expenditures:
$356,279

* Expenditures data includes accruals and are based on data through 31-Mar-2025.

BPA CO:
BPA COR:
Env. Compliance Lead:
Work Order Task(s):
Contract Type:
Coop
Pricing Method:
Cost Reimbursement (CNF)
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20 mi
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Deliverable Title WSE Sort Letter, Number, Title Start End Concluded
Effective implementation management and timely contract administration B: 119. Manage Administer Projects 01/31/2026
Completed Environmental Compliance Documentation. C: 165. Produce Environmental Compliance Documentation 01/31/2026
Complete Outreach and Education Activities D: 99. John Day Basin Office Education and Outreach 01/31/2026
Maintain working partnerships within the John Day Basin E: 191. CTWS Watershed Coordination in the John Day Basin 01/31/2026
Develop or update (out-year) prioritized Habitat Project list: Upload to CBFish F: 114. Identify and Select Projects in the John Day Basin 01/31/2026
Completed, approved, and compliant designs for Fox Reach 9 G: 175. NFJD - Fox Creek Reach 9 - Habitat Designs (Carried forward from prior contract) 01/31/2026
Complete approved, compliant, and final designs for Caribou Reconnection H: 175. MFJD - Caribou Creek Reconnection - Produce Restoration Design (Carried forward from prior contract) 01/15/2026
Complete approved and compliant final designs for Oxbow Phase 6 I: 175. MFJD - Oxbow Phase 6 (Ruby to Beaver) Designs (Carried forward from prior contract) 10/31/2025
Complete Middle Fork riparian plantings and ensure compliance with reporting needs J: 198. MFJD - Middle Fork John Day Plant Propagation/Planting 01/31/2026
Develop compliant and approved designs for The Dunstan Preserve Floodplain Enhancement project. K: 175. MFJD- Dunstan Preserve Floodplain Enhancement - Coyote to Balance Design 01/31/2026
Finalize compliant designs of the Holmes Diversion Replacement. L: 175. MFJD-Holmes Diversion Replacement and Habitat Restoration Project 01/31/2026
Finalize compliant designs for Granite Creek Culvert M: 175. MFJD- Granite Creek Culvert Design (carried forward from previous contract) 01/31/2026
Complete and compliant Deep Creek Culvert Designs N: 175. MFJD- Deep Creek Culvert Design (carried forward from prior contract) 10/15/2025
Complete and compliant Phipps Meadows designs O: 175. MFJD- Phipps Meadow Habitat Enhancement Design 01/31/2026
Completed designs for Belshaw Creek Diversion Consolidation P: 175. UJD-Belshaw Creek Diversion Consolidation and Irrigation Efficiency Project Designs 08/30/2025
Remove passage barrier on Belshaw Creek Q: 85. UJD-Belshaw Creek Diversion Consolidation and Irrigation Efficiency Project- Phase I 01/31/2026
Complete MSFCA designs R: 175. UJD - Mainstem Forrest Conservation Area Instream Habitat Project (carried forward from previous contract) 01/31/2026
Maintain previously implemented projects S: 198. Riparian Plant Maintenance and Adaptive Management 01/31/2026
Produce accessible, error-checked datasets T: 157. John Day Basin USGS Gauging Station Operations and Maintenance 01/31/2026
Implement Adaptive Management Opportunities U: 186. Adaptive Management 01/31/2026
Produce accessible, error-checked datasets V: 157. Fox Creek Effectiveness Monitoring 01/31/2026
Produce accessible, error-checked datasets W: 157. Upper and Middle Fork John Day Effectiveness Monitoring 01/31/2026
Deliverable: An accessible, error-checked data set with metadata X: 162. Analysis and Interpretation of Field Data Collected From Fisheries and Non-Fisheries Surveys 01/31/2026
Data stored in an accessible format in CDMS Y: 160. Project and Fisheries Data Management 01/31/2026
Completed Progress (Annual) Report Z: 132. Submit Progress Report for the period February 2024 to January 2025 06/30/2025
Habitat complexity installed. AA: 29. NFJD - Upper Cottonwood Creek Restoration Phase I 01/31/2026
Complete Hydrologic Assessment AB: 115. LJD - Thirtymile Hydrologic Assessment 01/31/2026
Produce Final Designs AC: 175. UJD - Indian Creek Diversion (Carryover from previous contract) 01/31/2026
Habitat and Passage Structures Monitored AD: 157. Implementation Effectiveness Monitoring 01/31/2026
Design set and supporting documentation. AE: 175. MFJD - Bates Pond Reconnection 01/31/2026
Perform Feasibility and Prioritization Assessments, and develop LTPB designs, on Conservation Properties Tributaries AF: 175. MFJD - Conservation Properties Tributaries Low-Tech Design 01/31/2026
Increased Floodplain habitat complexity and function. AG: 29. Oxbow Phase 6 (Ruby to Beaver) In-stream Habitat Restoration 01/31/2026
Fish Barrier Removed AH: 184. Deep Creek Culvert Replacement 09/30/2025
Riparian Function Improved AI: 198. Hay Creek Riparian Planting 01/30/2026
Habitat Condition Improved AJ: 29. NFJD - Upper Cottonwood Creek Restoration Phase II 01/31/2026
Upload Plan to CBfish AK: 174. Ritter Riparian Assessment 01/31/2026
Fish barrier removed AL: 85. Caribou Creek Reconnection (Phase 1) 01/31/2026
Upload Final Design Set AM: 175. LJD - Rock Creek Diversion Design 01/31/2026
Reduce Extent of Juniper Encroachment AN: 199. LJD - Battle Creek Juniper Removal 01/31/2026
Reduce Extent of Juniper Encroachment AO: 199. Mainstem Forrest Conservation Area Juniper Removal 01/31/2026
Upload Final Design to CB Fish AP: 175. Aldritch Mountain Tributary Low Tech Process Based Design and Permitting 01/31/2026
Habitat complexity increased AQ: 29. Caribou Creek Reconnection (Phase 1) 01/31/2026
Completed channel construction AR: 30. Caribou Creek Reconnection (Phase 1) 01/31/2026
Floodplain activation realized AS: 180. Oxbow Phase 6 (Ruby to Beaver) In-stream Habitat Restoration 01/31/2026
Floodplain activation realized AT: 180. NFJD - Upper Cottonwood Creek Restoration Phase I 01/30/2026

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Primary Focal Species Work Statement Elements
Chinook (Oncorhynchus tshawytscha) - All Populations
  • 1 instance of WE 114 Identify and Select Projects
  • 1 instance of WE 157 Collect/Generate/Validate Field and Lab Data
Chinook (O. tshawytscha) - Mid-Columbia River Spring ESU
  • 2 instances of WE 198 Maintain Vegetation
  • 1 instance of WE 199 Remove Vegetation
  • 1 instance of WE 186 Operate and Maintain Habitat/Passage/Structure
  • 2 instances of WE 29 Increase Aquatic and/or Floodplain Complexity
  • 1 instance of WE 30 Realign, Connect, and/or Create Channel
  • 1 instance of WE 180 Enhance Floodplain/Remove, Modify, Breach Dike
  • 2 instances of WE 85 Remove/Breach Fish Passage Barrier
  • 1 instance of WE 184 Install Fish Passage Structure
  • 1 instance of WE 174 Produce Plan
  • 12 instances of WE 175 Produce Design
  • 3 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 162 Analyze/Interpret Data
Steelhead (Oncorhynchus mykiss) - All Populations
  • 1 instance of WE 114 Identify and Select Projects
Steelhead (O. mykiss) - Middle Columbia River DPS (Threatened)
  • 3 instances of WE 198 Maintain Vegetation
  • 2 instances of WE 199 Remove Vegetation
  • 1 instance of WE 186 Operate and Maintain Habitat/Passage/Structure
  • 4 instances of WE 29 Increase Aquatic and/or Floodplain Complexity
  • 1 instance of WE 30 Realign, Connect, and/or Create Channel
  • 2 instances of WE 180 Enhance Floodplain/Remove, Modify, Breach Dike
  • 2 instances of WE 85 Remove/Breach Fish Passage Barrier
  • 1 instance of WE 184 Install Fish Passage Structure
  • 1 instance of WE 115 Produce Inventory or Assessment
  • 1 instance of WE 174 Produce Plan
  • 15 instances of WE 175 Produce Design
  • 4 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 162 Analyze/Interpret Data
Lamprey, Pacific (Entosphenus tridentata)
  • 1 instance of WE 199 Remove Vegetation
  • 1 instance of WE 175 Produce Design
  • 2 instances of WE 157 Collect/Generate/Validate Field and Lab Data
Freshwater Mussels
  • 1 instance of WE 175 Produce Design
Trout, Bull (S. confluentus) (Threatened)
  • 1 instance of WE 198 Maintain Vegetation
  • 1 instance of WE 184 Install Fish Passage Structure
  • 1 instance of WE 114 Identify and Select Projects
  • 7 instances of WE 175 Produce Design

Sort WE ID WE Title NEPA NOAA USFWS NHPA Has Provisions Inadvertent Discovery Completed
A 185 Periodic Status Reports for BPA
B 119 Manage Administer Projects
C 165 Produce Environmental Compliance Documentation
D 99 John Day Basin Office Education and Outreach
E 191 CTWS Watershed Coordination in the John Day Basin
F 114 Identify and Select Projects in the John Day Basin
G 175 NFJD - Fox Creek Reach 9 - Habitat Designs (Carried forward from prior contract)
H 175 MFJD - Caribou Creek Reconnection - Produce Restoration Design (Carried forward from prior contract)
I 175 MFJD - Oxbow Phase 6 (Ruby to Beaver) Designs (Carried forward from prior contract)
J 198 MFJD - Middle Fork John Day Plant Propagation/Planting
K 175 MFJD- Dunstan Preserve Floodplain Enhancement - Coyote to Balance Design
L 175 MFJD-Holmes Diversion Replacement and Habitat Restoration Project
M 175 MFJD- Granite Creek Culvert Design (carried forward from previous contract)
N 175 MFJD- Deep Creek Culvert Design (carried forward from prior contract)
O 175 MFJD- Phipps Meadow Habitat Enhancement Design
P 175 UJD-Belshaw Creek Diversion Consolidation and Irrigation Efficiency Project Designs
Q 85 UJD-Belshaw Creek Diversion Consolidation and Irrigation Efficiency Project- Phase I
R 175 UJD - Mainstem Forrest Conservation Area Instream Habitat Project (carried forward from previous contract)
S 198 Riparian Plant Maintenance and Adaptive Management
T 157 John Day Basin USGS Gauging Station Operations and Maintenance
U 186 Adaptive Management
V 157 Fox Creek Effectiveness Monitoring
W 157 Upper and Middle Fork John Day Effectiveness Monitoring
X 162 Analysis and Interpretation of Field Data Collected From Fisheries and Non-Fisheries Surveys
Y 160 Project and Fisheries Data Management
Z 132 Submit Progress Report for the period February 2024 to January 2025
AA 29 NFJD - Upper Cottonwood Creek Restoration Phase I
AB 115 LJD - Thirtymile Hydrologic Assessment
AC 175 UJD - Indian Creek Diversion (Carryover from previous contract)
AD 157 Implementation Effectiveness Monitoring
AE 175 MFJD - Bates Pond Reconnection
AF 175 MFJD - Conservation Properties Tributaries Low-Tech Design
AG 29 Oxbow Phase 6 (Ruby to Beaver) In-stream Habitat Restoration
AH 184 Deep Creek Culvert Replacement
AI 198 Hay Creek Riparian Planting
AJ 29 NFJD - Upper Cottonwood Creek Restoration Phase II
AK 174 Ritter Riparian Assessment
AL 85 Caribou Creek Reconnection (Phase 1)
AM 175 LJD - Rock Creek Diversion Design
AN 199 LJD - Battle Creek Juniper Removal 03/13/2025
AO 199 Mainstem Forrest Conservation Area Juniper Removal
AP 175 Aldritch Mountain Tributary Low Tech Process Based Design and Permitting
AQ 29 Caribou Creek Reconnection (Phase 1)
AR 30 Caribou Creek Reconnection (Phase 1)
AS 180 Oxbow Phase 6 (Ruby to Beaver) In-stream Habitat Restoration
AT 180 NFJD - Upper Cottonwood Creek Restoration Phase I