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Columbia Basin Fish and Wildlife Program Columbia Basin Fish and Wildlife Program
SOW Report
Contract 75986: 1991-029-00 EXP USGS EMERGING ISSUE/MEASURE SNAKE R FALL CHIN ESU
Project Number:
Title:
Snake River Fall Chinook Research & Monitoring
Stage:
Implementation
Area:
Province Subbasin %
Basinwide - 100.00%
Contract Number:
75986
Contract Title:
1991-029-00 EXP USGS EMERGING ISSUE/MEASURE SNAKE R FALL CHIN ESU
Contract Continuation:
Previous: Next:
72898: 1991-029-00 EXP USGS EMERGING ISSUE/MEASURE SNAKE R FALL CHIN ESU
  • 79163: 1991-029-00 EXP USGS EMERGING ISSUE/MEASURE SNAKE R FALL CHIN ESU
  • 79371: 1991-029-00 EXP USGS EMERGING ISSUE/MEASURE SNAKE R FALL CHIN ESU
Contract Status:
Closed
Contract Description:
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Regional Back Ground
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Project 199102900 began in 1991 to provide some of the first biological data on the contemporary population of fall Chinook salmon Oncorhynchus tshawytscha in the Snake River basin that was eventually listed in 1992 under the Endangered Species Act as the Snake River fall Chinook salmon evolutionary significant unit (ESU). As in past years, project 199102900 staffed by the U. S. Fish and Wildlife Service and U. S. Geological Survey will complement and be coordinated with existing Snake River fall Chinook salmon ESU projects including staff of Idaho Power Company, the Nez Perce Tribe Department of Fisheries Resources Management, National Oceanographic and Atmospheric Administration, Pacific Northwest Laboratory, University of Idaho, and Washington Department of Fish and Wildlife.

The 2008 Biological Opinion and RPA have received much attention from the ... resources management community in the Pacific Northwest.  Most recently it was reviewed by the Obama Administration.  This review led to an Adaptive Management Implementation Plan (AMIP).  A full review of the AMIP is beyond the scope of this back ground statement, but it builds on the 2008 Biological Opinion and parallels and supports the other regional actions outlined above.  The AMIP advocates collecting more data and improving analytic tools to better inform future adaptive management decision making.  It calls for enhanced research on salmon predators and invasive species including a determination of whether removals of smallmouth bass in areas of intense predation could reduce the mortality of juvenile salmonids.  It supports enhanced RM&E actions to fill data gaps including: adult status and trend monitoring, juvenile status and trend monitoring, and the development of expanded life-cycle and passage models.  Project staff will be actively involved in the AMIP process.

We will also summarize historical data and collect new data to make progress towards answering two questions posed in the Monitoring, Evaluation, Research and Reporting plan: (1) is the ESU abundant, diverse, productive, and spatially distributed; and (2) is the ESU responding to implemented actions as anticipated?  We recast these two questions as regional objectives: (1) increase the abundance, productivity, and spawning distribution of natural origin adults, and (2) increase the abundance and diversity of natural-origin subyearlings during early freshwater rearing and migration.  The success criteria for regional objective 1 will be: (1) an increased understanding of the anthropogenic, biological, and environmental factors that influenced historical and contemporary trends in adult abundance, (2) an increased understanding of how varying influential anthropogenic, biological, and environmental factors might facilitate meeting the minimum viability threshold, and (3) documentation of the status of escapement of natural-origin adults to the spawning areas relative to the explicit population level spatial structure criteria, and (4) support for expanded life cycle and passage modeling.  The success criteria for objective 2 will be: (1) estimates of passage abundance for natural-origin fall Chinook salmon subyearlings at Lower Granite Dam during the spring, summer, and fall, (2) an increased understanding of the anthropogenic, biological, and environmental factors that influence trends in passage abundance, (3) an increased understanding of how varying influential anthropogenic, biological, and environmental factors might increase passage abundance of natural-origin fall Chinook salmon subyearlings, (4) an increased understanding of the effect of predation in riverine habitat on passage abundance of natural-origin fall Chinook salmon subyearlings, and (5) support for expanded life cycle and passage models.

We will accomplish the regional objectives by accomplishing several scientific objectives each of which will produce final deliverables including models to support the AMIP process.


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Regional Objective 1 Final Deliverables
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Final deliverable 1A will be a set of models that provide a historical retrospective of adult abundance and spawning distribution that will rely on adult counts made without distinction of adult origin, but with redd counts made throughout the Snake River basin from 1947 to 2012. These models will accomplish the following scientific objectives: (1) describe the numerical trends in the adult counts, (2) describe the numerical and spatial trends in redd counts; (3) evaluate changes in the ability to use redd counts as accurate and precise predictors of adult counts, and (4) increase the understanding of how the numerical trends in the adult counts were influenced by anthropogenic, biological, and environmental change.  We will strive to complete a journal manuscript describing the results before the end of 2013. The models and the manuscript will confirm completion of the regional objective 1 success criterion 1.

Final deliverable 1B will be a second set of models that help to explain and predict increases in the abundance, productivity, and spawning distribution of natural origin adults by focusing on estimated counts of natural-origin adults at Lower Granite Dam from run construction and on redd counts made upstream of Lower Granite Reservoir after 1982 (or as early as possible depending on data availability).  It will accomplish the following scientific objectives: (1) increase the understanding of how the numerical trends in the estimated counts of natural-origin adults during 1983–2013 were influenced by anthropogenic, biological, and environmental change, (2) predict how varying influential anthropogenic, biological, and environmental factors might affect the status of natural-origin adults relative to the minimum viability threshold, and (3) predict the status of escapement of natural-origin adults to the spawning areas relative to the explicit population level spatial structure criteria.  We begin developing in 2013 using the redd count data we collect in the Snake River and the basinwide redd data collected by our research group.  We will strive to complete a journal manuscript describing the results before the end of 2015. The model and the manuscript will confirm completion of objective 1 success criteria 2 and 3.


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Regional Objective 2 Final Deliverables
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Final deliverable 2A will be set of models that help to explain and predict variation in passage abundance of natural-origin subyearlings at Lower Granite dam during 1992–2014. The scientific objectives will be to: (1) describe numerical trends in passage abundance of natural-origin fall Chinook salmon subyearlings estimated by reconstructing the run; (2) compare annual passage timing distributions calculated using different methods, (3) increase the understanding of how the numerical trends in passage abundance were associated with anthropogenic, biological, and environmental change, (4) use the results from scientific objectives 1 and 2 to predict how varying influential anthropogenic, biological, and environmental factors might increase abundance of natural-origin fall Chinook salmon subyearlings. We will begin developing the models in 2012, add new PIT-tag data from our project and collected by our collaborators as it becomes available, and strive to complete a journal manuscript describing the results before the end of 2015. The models and the manuscript will confirm completion of objective 2 success criteria 1, 2, and 3.

Final deliverable 2B will be a set of models that focus on predation by smallmouth bass in riverine rearing habitat along the lower Snake River during 1997–2014. The scientific objectives will be to: (1) estimate the abundance of smallmouth bass, (2) describe the diet of smallmouth bass, and (3) estimate subyearling loss to predation by smallmouth bass. We will begin collecting data in 2012 and strive to complete a journal manuscript describing the results before the end of 2015. The models and the manuscript will confirm completion of objective 2 success criterion 4.
  
Account Type(s):
Expense
Contract Start Date:
06/01/2017
Contract End Date:
05/31/2018
Current Contract Value:
$225,742
Expenditures:
$225,742

* Expenditures data includes accruals and are based on data through 31-Mar-2025.

BPA CO:
Env. Compliance Lead:
Contract Contractor:
Work Order Task(s):
Contract Type:
Contract (IGC)
Pricing Method:
Cost Reimbursement (CNF)
MarkerMarkerMarker
50 km
50 mi
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Full Name Organization Write Permission Contact Role Email Work Phone
William Connor US Fish and Wildlife Service (USFWS) Yes Technical Contact william_connor@fws.gov (208) 476-2242
Deborah Docherty Bonneville Power Administration Yes COR dldocherty@bpa.gov (503) 230-4458
Israel Duran Bonneville Power Administration No Env. Compliance Lead induran@bpa.gov (503) 230-3967
Desmond Gelman Bonneville Power Administration No CO Assistant dxgelman@bpa.gov (503) 230-4960
Elizabeth Gordon US Geological Survey (USGS) No Administrative Contact egordon@usgs.gov (509) 538-2299x241
Jennifer Harlan US Geological Survey (USGS) No Administrative Contact jharlan@usgs.gov (509) 538-2983
Khanida Mote Bonneville Power Administration Yes Contracting Officer kpmote@bpa.gov (503) 230-4599
Kenneth Tiffan US Geological Survey (USGS) Yes Contract Manager ken_tiffan@usgs.gov (509) 538-2972
Steve Waste US Geological Survey (USGS) No Supervisor swaste@usgs.gov (509) 538-2299x236
Dorothy Welch Bonneville Power Administration Yes F&W Approver dwwelch@bpa.gov (503) 230-5479


Viewing 11 of 11 Work Statement Elements
Sort Order
WSEV ID
WE ID
Work Element Name
Title
Description
WSE Effective Budget
% of Total WSE Effective Budget
WSE Start
WSE End
A165410185Produce CBFish Status ReportPeriodic Status Reports for BPAThe Contractor shall report on the status of milestones and deliverables in Pisces. Reports shall be completed either monthly or quarterly as determined by the BPA COTR. Additionally, when indicating a deliverable milestone as COMPLETE, the contractor shall provide metrics and the final location (latitude and longitude) prior to submitting the report to the BPA COTR.$2,0000.89%10/01/201705/31/2018
B165411165Produce Environmental Compliance DocumentationEnsure environmental compliance requirements have been metProvide BPA with information necessary for environmental clearance for all contract activities during FY17. Submit FY18 SOW and supporting documents as needed for BPA's Environmental Compliance Group to determine environmental compliance status.$5000.22%06/01/201705/31/2018
C165415162Analyze/Interpret DataJuvenile run reconstructionEstimating the number of juvenile fall Chinook salmon that pass Lower Granite Dam each year is a necessary component to conducting two-stage stock-recruitment analyses with covariates to understand juvenile to adult population dynamics. A critical part of reconstructing the juvenile run of Snake River fall Chinook salmon at Lower Granite Dam is estimating the portion of fish that pass the dam during winter when the fish bypass system is not operated. Existing data will be analyzed to evaluate different statistical approaches for reconstructing the juvenile run. Progress to date includes an preliminary Bayesian method and a maximum likelihood method. We will also identify future data needs that can be used to estimate the number of fish passing during the winter, which will fill this current data gap.$128,00056.70%06/01/201705/31/2018
D165416157Collect/Generate/Validate Field and Lab DataAerial redd surveysThis project has been conducting annual fall Chinook salmon redd surveys since 1991. The Idaho Power Company (IPC) has typically conducted helicopter surveys in cooperation with the USFWS to collect redd counts in the Snake River. To reduce the risk associated with manned flights, the IPC began using an unmanned aerial system (UAS) to make aerial counts at selected sites in 2013. These are remote-controlled rotor craft that use high-resolution cameras to collect redd data. This is advantageous because a permanent record is made of each flight that can be used for additional analyses beyond that of just counts. The FAA has strict regulations concerning the use of UASs and it is easier for federal agencies to gain permission for their use than for private companies like IPC. The plan is for the USGS and USFWS to begin conducting these surveys jointly with IPC. We plan on conducting UAS surveys in 2017 pending gaining appropriate training and approval. We may also explore the option of putting a high-resolution camera on a helicopter to obtain a complete video census of redds in the Snake River.$20,0008.86%06/01/201705/31/2018
E165417162Analyze/Interpret DataEnumerate reddsThe video images obtained from aerial redd surveys (WE C) will be reviewed by two or more people to determine the number of redds at each site and the number of new redds counted during each week. The number of new redds counted at each site will be summed to get a total redd count. The next step is to use this number to estimate the total number of redds in the entire Hells Canyon reach. To do this, we will use a method developed by the U of I, which has been published in a journal manuscript. In brief, a random-stratified approach is being used to sample sample sites with low, medium, and high probabilities of being used by spawners. Redd counts from UAS surveys are then expanded to the entire reach based on the use of different strata.$15,0006.64%06/01/201705/31/2018
F169665158Mark/Tag AnimalsPIT tagging at Lower Granite DamThis project has begun to explore the use of 8-mm PIT tags to tag juvenile Snake River fall Chinook salmon in the wild. A laboratory study we conducted showed no effect on growth or survival from tagging fish as small as 41 mm with 8-mm tags. However, for these tags to be useful in our ongoing tagging and monitoring efforts of the Snake River population, they must be detectable at mainstem dams. Preliminary investigation in 2016 showed high detectability at Lower Granite Dam of the 8-mm tag. In 2017, we will collect subyearlings during the first week of June from the Lower Granite Fish Facility. A total of 300 fish will collected and held overnight. The following day, 75 fish each will be tagged with one of the following tags: 8-mm Biomark tag, 8-mm Oregon RFID tag, 9-mm Biomark tag, and 12-mm Biomark tag. Fish will then be held for and additional 24 h to evaluate short-term mortality and tag loss. Fish will then be released into the bypass system upstream of the separator.$10,0004.43%06/01/201706/15/2017
G169233162Analyze/Interpret DataPIT tag detection at Lower Granite DamThe fish PIT tagged under WE F will be detected in the fish bypass at Lower Granite Dam. Detection efficiency of each tag type will be calculated as the number of fish detected by an PIT-tag detection coil divided by the number of fish released multiplied by 100.$5,0002.21%06/01/201706/30/2017
H165418119Manage and Administer ProjectsManage And Administer Project 1991-029-00Covers work to manage on-the-ground efforts associated with the project. This also covers management of the administrative details of the project, which includes coordinating efforts of other project cooperators, support of BPA's programmatic requirements such as financial reporting, and development of a FY18 SOW package (includes draft SOW, budget and property inventory if applicable).$5,2422.32%06/01/201705/31/2018
I169699132Produce Progress (Annual) ReportSubmit Progress Report for the period 1/1/16 through 12/31/16This CY2016 annual report is a deliverable in previous contract 72898. At the time of preparing this CR-303753 for routing through the BPA contracting process, the 2016 annual report has not yet been submitted. Per BPA Fish and Wildlife policy we are adding this annual report work element to this next CR-303753. If/when the 2016 annual report is submitted under the prior contract, the BPA COTR will then cancel this work element.$00.00%06/01/201706/30/2017
J165419132Produce Progress (Annual) ReportSubmit Progress Report for the period 1/1/17 through 12/31/17The progress report summarizes the project goal, objectives, hypotheses, completed and uncompleted deliverables, problems encountered, lessons learned, and long-term planning. Examples of long-term planning include future improvements, new directions, or level of effort for contract implementation, including any ramping up or ramping down of contract components or of the project as a whole. If your statement of work includes any of the following work elements • 70 Install Equipment • 156 Develop RM&E Methods and Designs • 157 Collect/Generate/Validate Field and Lab Data • 158 Mark and Tag Animals • 159 Transfer/Consolidate Regionally Standardized Data • 160 Create/Manage/Maintain Database • 162 Analyze/Interpret Data you will need to provide a Technical report. Technical progress reports should be submitted using the template available in Taurus (https://www.cbfish.org, go to your project, click on Reports & Documents, then go to the RM&E Technical Report tab). If producing a manuscript for a peer-reviewed publication, use work element 183: Produce Journal Article.$30,00013.29%08/01/201705/01/2018
K165420202Produce BiOp RPA ReportBiOp RPA report for calendar year 2017Submit BiOp RM&E Report to USGS for entry into Taurus for Calendar Year 2017. Projects that support one or more RM&E RPAs (i.e., RPAs 50-73) under the FCRPS BiOp are required to report their results. To facilitate the summary of these results across the entire Columbia River Basin, and to provide more clarity as to the format required under the BiOp, separate BiOp reports are now required to be completed online. If desired, the required information can be prepared in MS Word, and be pasted into Taurus. The online BiOp RPA report in Taurus (www.cbfish.org) should include the data, analyses, and data management completed by your project by December 31, 2017. Any activity after the last day of the Calendar Year should be included in a subsequent BiOp report. For example, if you have completed redd surveys, but have not completed the analyses, you will report the preliminary data (# of redds). You do not need to rush your analyses; they may be reported in the subsequent RPA report. For each RPA, follow the directions in Taurus for each of the three sections and, as appropriate, input graphical or tabular data, accompanied by explanatory text. These are cumulative summary reports and should show relevant results for the life of your project. Each year, note trends and whether they are changing from one year (or groups of years) to the next. The reporting site is found at https://www.cbfish.org/Project.mvc/Publications/1991-029-00/2015/BiOpAnnualReport.$10,0004.43%07/01/201703/15/2018
      
$225,742
   

Deliverable Title WSE Sort Letter, Number, Title Start End Concluded
Complete environmental compliance requirements B: 165. Ensure environmental compliance requirements have been met 05/31/2018 05/29/2018
Preliminary juvenile run reconstruction methods C: 162. Juvenile run reconstruction 05/31/2018 05/29/2018
Redd counts D: 157. Aerial redd surveys 05/31/2018 05/29/2018
Redd count E: 162. Enumerate redds 01/31/2018 01/31/2018
PIT tagged fish F: 158. PIT tagging at Lower Granite Dam 06/15/2017 06/15/2017
PIT-tag detection G: 162. PIT tag detection at Lower Granite Dam 06/30/2017 06/30/2017
FY17 Project and contract management complete H: 119. Manage And Administer Project 1991-029-00 05/31/2018 05/29/2018
Completed Annual Report J: 132. Submit Progress Report for the period 1/1/17 through 12/31/17 05/01/2018 05/29/2018

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Primary Focal Species Work Statement Elements
Chinook (O. tshawytscha) - Snake River Fall ESU (Threatened)
  • 1 instance of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 158 Mark/Tag Animals
  • 3 instances of WE 162 Analyze/Interpret Data

Sort WE ID WE Title NEPA NOAA USFWS NHPA Has Provisions Inadvertent Discovery Completed
A 185 Periodic Status Reports for BPA 06/01/2017
B 165 Ensure environmental compliance requirements have been met 06/01/2017
C 162 Juvenile run reconstruction 06/01/2017
D 157 Aerial redd surveys 06/01/2017
E 162 Enumerate redds 06/01/2017
F 158 PIT tagging at Lower Granite Dam 06/01/2017
G 162 PIT tag detection at Lower Granite Dam 06/01/2017
H 119 Manage And Administer Project 1991-029-00 06/01/2017
I 132 Submit Progress Report for the period 1/1/16 through 12/31/16 06/01/2017
J 132 Submit Progress Report for the period 1/1/17 through 12/31/17 06/01/2017
K 202 BiOp RPA report for calendar year 2017