84060 REL 1: Rev 2: WE C: Work Element Summary

Work Element Summary PDF

Select a work element:

Basics

Contract Number:

84060 REL 1

Contract Title:

1991-051-00 EXP STATISTICAL SUPPORT LIFE CYCLE STUDIES

Contract Start Date:

1/1/2023

Contract End Date:

12/31/2023

WE ID:

162. Analyze/Interpret Data

Work Element Usage Report

Title:

C: 162 - Analyze and integrate performance measures

Description:

The BiOp, Remand, and RM&E working groups have identified a myriad of performance measures to be evaluated during check-ins and recovery assessments. This task will continue in the development and update of an integrated performance database to allow fish managers, independent investigators, the BPA, and the public to evaluate for themselves the status and trends of performance measures leading to recovery decisions. This will include updating ROSTER analyses as needed. New databases will be added as directed by BPA needs. The interactive software on the internet will allow users to review information sorted by stock, location, province, subbasin, performance measures, or any combination thereof. The site also assists users in summarizing the information based on their own unique priorities for recovery. Websites will be developed to report adult fallback and migration delay at dams.

A focus in 2023 will be to continue assisting the BPA and their agencies with the proper approach to the analysis of monitoring data. Assistance to the BPA may consist of technical reviews and one-of-a-kind data analysis to assist in decision and management, assistance in the design and interpretation of the spring spill experiment and Ice Harbor turbine survival study, and in responding to proposed changes in the PIT plan. We will continue our efforts to assist agencies with proper approaches to analyzing juvenile outmigration in the tributaries, fallback, and adult escapement.

WE Agreement Type:

Contracted

Deliverable Specification:

An error-checked data set and metadata will be stored consistent with the database(s) and protocol documented in contract. (Optional: This includes the following methods: (List methods).) Data will be publicly accessible, with stipulations for limitations of use and data generator attribution. Additional implementation notes and analysis will be in the Annual Report, or attached to the protocol as implementation notes.

The data file/s will be stored in the data repository/ies specified in the contract. In your annual report (WE 132), you are required to provide a link to your data set with a file name in the report's first appendix. If not web accessible, provide instructions (e.g., file name, directory, or position title) for accessing data.

WSE Effective Budget:

$124,142

% of Total WSE Effective Budget:

29.34%

WSE Start:

01/01/2023

WSE End:

12/31/2023

WSE Completion:

12/29/2023

WSE Progress:

Concluded

WSE ID Continued From:

n/a

WSE ID Continued To:

n/a

Finite or Recurring:

Recurring

Budget History

SOWRevision	Planned	Updated	Contractor Comments (optional)	BPA Comments (optional)
1. Amendment 001 (01/01/2023 - 12/31/2023)	$125,303	$124,142
Work Element Budget (Current Performance Period)	$125,303	$124,142

Milestones

4 Milestones

Sort	Type	Title	Start	End	Status	Modified By	Modified Date
A	PUBPROTOCOL	Review, revise, & finalize Study Plan sample design protocol and methds in monitoringResources.org	1/1/2023	12/31/2023	Concluded	Christine Petersen	6/10/2024 2:06:39 PM
		Description: The Study Plan's Sample Design, Protocol and Methods for this work element are stored at MonitoringResources.org and need to be completed (i.e., "Finalized" through MonitoringResources.org), preferably prior to data analysis but must be completed upon submittal of your annual report. Preparations for contract renewals must include reviewing any previously finalized Sample Designs, Protocols & Methods to ensure that they are consistent with how work will be done in any subsequent contract.
B		Maintain software and database	1/1/2023	12/31/2023	Concluded	Christine Petersen	6/10/2024 2:06:39 PM
		Description: The performance measures database must be updated annually to incorporate the previous year's results. This effort involves updating smolt travel times, survivals, harvest, escapement, ocean survival, transport effects, flow, spill targets, total dissolved gas targets, smolt-to-adult ratios, etc. Other maintenance issues include upkeep of the website and server. Linkage of status and trends to BPA annual reporting needs will be developed.
C		Develop analysis tools	1/1/2023	12/31/2023	Concluded	Christine Petersen	6/10/2024 2:06:39 PM
		Description: Analysis tools will be further developed to permit users to tailor status and trends analyses. Standardized data formats to facilitate community-based data transfer and Q/A will be developed. Tools for the dynamic management of the data resources and their presentation will be developed to reduce labor costs and decrease acquisition time.
D	DELIV	Deliverable: An accessible, error-checked data set with metadata		12/31/2023	Concluded	Christine Petersen	6/10/2024 2:06:39 PM
		Description: An error-checked data set and metadata will be stored consistent with the database(s) and protocol documented in contract. (Optional: This includes the following methods: (List methods).) Data will be publicly accessible, with stipulations for limitations of use and data generator attribution. Additional implementation notes and analysis will be in the Annual Report, or attached to the protocol as implementation notes. The data file/s will be stored in the data repository/ies specified in the contract. In your annual report (WE 132), you are required to provide a link to your data set with a file name in the report's first appendix. If not web accessible, provide instructions (e.g., file name, directory, or position title) for accessing data.

Metrics

Implementation Metrics

Metric	Planned	Actual
1464. Primary R, M, and E Focal Strategy [Population Status, Hydrosystem, Tributary Habitat, Estuary/Ocean, Harvest, Hatchery, Predation, Multiple Strategies]	Hydrosystem	Hydrosystem
1472. Primary R, M, and E Type [Status and Trend Monitoring, Action Effectiveness Research, Uncertainties Research, Project Implementation/ Compliance Monitoring]	Status and Trend Monitoring	Status and Trend Monitoring
1478. Secondary R, M, and E Type [Status and Trend Monitoring, Action Effectiveness Research, Uncertainties Research, Project Implementation/ Compliance Monitoring]	Uncertainty Research	Uncertainty Research
1495. Secondary R, M, and E Focal Strategy [Population Status, Hydrosystem, Tributary Habitat, Estuary/Ocean, Harvest, Hatchery, Predation, Multiple Strategies]	Population Status	Population Status

Location

<a target='blank' href='https://www.monitoringresources.org/Designer/Design/Detail/7713'>Location data for Area of Inference (AOI) should be entered into MonitoringResources.org. Click here to go to that site.</a>

Focal Species

Primary Focal Species:

Chinook (Oncorhynchus tshawytscha) - All Populations; Coho (Oncorhynchus kisutch) - Lower Columbia River ESU (Threatened); Coho (O. kisutch) - Unspecified Population; Sockeye (Oncorhynchus nerka) - All Populations; Steelhead (Oncorhynchus mykiss) - All Populations

Secondary Focal Species:

None

Environmental Compliance

This work element does not require Environmental Compliance

RM&E Metadata

Data Repositories:

Title	Link
DART - Data Access in Real Time	http://www.cbr.washington.edu/dart/

Study Plan:

Study Plan Name	Study Plan Owner	Protocol State	Sample Design Name
Monitor and Evaluate the Status and Trends in Salmonid Stocks and the Hydrosystem (1991-051-00) v1.0	Cindy Helfrich	Draft	Analyze and integrate performance measures - University of Washington v1.0

Methods:

ID	Name	Type	Optional	Customized Based On	Status
485	Cormack-Jolly-Seber (CJS) Model v1.0	Data Analysis/Interpretation	No	N/A	Finalized
1521	Estimate Annual Differential Delayed Effects Associated with Transporting Smolts Using a Life-Cycle Model v1.0	Data Analysis/Interpretation	No	N/A	Draft
1519	Estimate Average Perceived Upriver Adult Salmonid Survival from Bonneville Dam to Lower Granite Dam by Release Year Using a Life-Cycle Model v1.0	Data Analysis/Interpretation	No	N/A	Draft
1520	Estimate Average Perceived Upriver Adult Salmonid Survival from Bonneville Dam to Lower Granite Dam by Return Year Using a Life-Cycle Model v1.0	Data Analysis/Interpretation	No	N/A	Draft
1536	Estimate Dam Detection Probability Using PIT-tag Detections v1.0	Data Analysis/Interpretation	No	N/A	Draft
587	Estimate Dam Passage Proportion and Route-Specific Survival Using Multiple Releases v1.0	Data Analysis/Interpretation	No	N/A	Draft
1538	Estimate Inriver Salmonid Smolt Survival From Lower Granite Dam to Bonneville Dam using a Life-Cycle Model v1.0	Data Analysis/Interpretation	No	N/A	Draft
958	Estimate Life-Cycle Survival and Transportation Effects for Non-residualizing Chinook Using PIT-Tag Detections v1.0	Data Analysis/Interpretation	No	N/A	Draft
1603	Estimate Ocean Survival v1.0	Data Analysis/Interpretation	No	N/A	Draft
1535	Estimate Salmonid Survival from Bonneville Dam to Bonneville Dam for Non-transported Fish Using a Life-Cycle Model v1.0	Data Analysis/Interpretation	No	N/A	Draft
1522	Estimate Smolt-to-Adult Ratio (SAR) using CWT Data v1.0	Data Analysis/Interpretation	No	N/A	Finalized
1537	Estimate the Harmonic Mean of Salmonid Travel Time Using PIT-tag Detections v1.0	Data Analysis/Interpretation	No	N/A	Draft
1539	Estimate The Number of Days in a Year That Daily Average TDG is Out of Compliance v1.0	Data Analysis/Interpretation	No	N/A	Draft
1529	Estimate The Number of Days in a Year That Flow Was Out of Compliance with Objectives v1.0	Data Analysis/Interpretation	No	N/A	Draft
716	Estimate the Number of Days in a Year that Water Temperature Was Out of Compliance v1.0	Data Analysis/Interpretation	No	N/A	Finalized
1604	Estimate Transport/Inriver Ratio (T/I) v1.0	Data Analysis/Interpretation	No	N/A	Draft
1602	Summarize and Assess Adult Passsage by Project, Species, and Run v1.0	Data Analysis/Interpretation	No	N/A	Draft

Metrics:

Title	Category	Subcategory	Subcategory focus 1	Subcategory focus 2
Adult Passage	Fish	Abundance of Fish (ID: 46)	Fish Life Stage: Adult - Returner	Fish Origin: Unknown
Smolt Survival (ROSTER) - LGR to BON	Fish	Survival: Fish (ID: 97)	Fish Life Stage: Juvenile - Migrant	Fish Origin: Both
Smolt Travel Time - Harmonic mean travel time in days	Fish	Survival: Fish (ID: 97)	Fish Life Stage: Juvenile - Migrant	Fish Origin: Both
Smolt Survival (CJS)	Fish	Survival: Fish (ID: 97)	Fish Life Stage: Juvenile Fish	Fish Origin: Both
Adult Survival by Return Year	Fish	Survival Rate: Fish (ID: 99)	Fish Life Stage: Adult - Returner	Fish Origin: Both
Ocean Survival (BON-to-BON survival for nontransported fish)	Fish	Survival Rate: Fish (ID: 99)	Fish Life Stage: Adult - Returner	Fish Origin: Both
SAR from CWT data	Fish	Survival Rate: Fish (ID: 99)	Fish Life Stage: RANGE: Juvenile to Adult	Fish Origin: Unknown
SAR from PIT-tag data	Fish	Survival Rate: Fish (ID: 99)	Fish Life Stage: RANGE: Juvenile to Adult	Fish Origin: Both
Flow - Days out of compliance for a dam in a season	Hydrology/Water Quantity	Flow (ID: 104)	NA	NA
D for LGR	Other	Not Applicable (ID: 243)	NA	NA
D for LGS	Other	Not Applicable (ID: 243)	NA	NA
D for LMN	Other	Not Applicable (ID: 243)	NA	NA
Systemwide D	Other	Not Applicable (ID: 243)	NA	NA
Systemwide T/I	Other	Not Applicable (ID: 243)	NA	NA
T/I for LGR	Other	Not Applicable (ID: 243)	NA	NA
T/I for LGS	Other	Not Applicable (ID: 243)	NA	NA
T/I for LMN	Other	Not Applicable (ID: 243)	NA	NA
Smolt Detection Probability	Other	Not Applicable (ID: 243)	Fish Life Stage: Juvenile Fish	Fish Origin: Unknown
TDG - No. of days out of compliance when avg. TDG exceeds levels	Water Quality	Dissolved Gas Concentration (By Gas) (ID: 155)	NA	NA
Temperature - Number of days out of compliance with 7DADM	Water Quality	Water Temperature (ID: 162)	NA	NA

Area of Inference:

Name	Value
Columbia River Basin	Yes

Please correct the errors noted below.

Implementation Metrics