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Columbia Basin Fish and Wildlife Program Columbia Basin Fish and Wildlife Program
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Contract Number:
Contract Title:
2003-017-00 EXP ISEMP - USFWS ENTIAT R FISHERIES EFFECTNESS M & E
Contract Start Date:
2/1/2010
Contract End Date:
1/31/2011
Title:
H: 157 - Conduct a mark-recapture study on the Entiat River as part of IMW
Description:
This task funds the USFWS to lead a mark-recapture study of juvenile anadromous salmonids at sites in the Entiat River watershed under the Entiat Intensively Monitored Watershed (IMW) experimental design.

The mark-recapture study will use various capture techniques including but not limited to electrofishing, seining, snerding, snorkel-herding, dip netting, and e-herding.

All USFWS staff involved with this survey work will be trained in various capture methods and have prior snorkeling experience. Snorkeling will be done in dry suits. Water temperature will be collected during each survey.
WE Agreement Type:
Contracted
Deliverable Specification:
Surveys will be conducted during two time periods throughout the year: in summer (July 23 - August 15, or start date will be triggered when discharge is less than 400 cfs at the Entiat River gage) and winter/spring (February/March). This contract covers the summer capture period only. The USFWS is responsible for providing from 6 to 9 personnel for the summer survey period as sampling needs dictate. Each survey will be completed within a three week period. Surveys will be conducted following the protocol currently in development.

The USFWS are responsible for ensuring that USFWS personnel are at the site in enough time to be ready to begin surveys at the time specified by the USFWS crew leader. The USFWS crew leader will be responsible for ensuring that the capture activities start at the appropriate time in the morning to maximize the time available to complete each capture and tagging event before water temperatures become limiting. This will mean early start times during the summer collection period.

At each selected site, the collected juvenile salmon and steelhead will be PIT tagged to enable life-stage specific survival estimates via recapture in subsequent seining/collection surveys, at rotary screw traps, extended length PIT tag arrays, and mainstem dam PIT tag interrogation facilities. Additionally, each PIT tagged individual will be weighed, measured for length, and life stage identified. Scale samples will be collected from a subset of steelhead collected. Physical site description will include, at a minimum, site length sampled, and proportion of major instream habitat types within this site.

Quality controlled raw data and quality controlled summarized fish species and size data with GPS locations, will be entered by USFWS and stored in Microsoft Access databases known at Automated Template Modules (ATMs) that will be provided by NOAA Fisheries. Data will be uploaded by December 31, 2010 to NOAA Fisheries using the ATM and notice will be provided to BPA and Terraqua, Inc. when the data has been uploaded. The contractor will be responsible for all quality assurance/quality control steps necessary to ensure that data is properly collected and entered into the ATM.

Data will include:
1. geographic location of sampled sites (latitude and longitude);
2. total stream length surveyed;
3. number of fish captured by species, scale samples obtained, and life history stage;
4. length and weight for a sample of collected fish;
5. codes for deployed PIT tags, referenced to the individual records of tagged fish;
6. description and sample rate for other deployed marks;
7. recapture information for marked fish when encountered (length, weight, life history stage, and PIT tag code if applicable); and
8. length of site and physical instream habitat description.
WSE Effective Budget:
$20,000
% of Total WSE Effective Budget:
10.90%
WSE Start:
05/01/2010
WSE End:
12/31/2010
WSE Completion:
12/31/2010
WSE Progress:
Concluded
WSE ID Continued From:
n/a
WSE ID Continued To:
n/a
Finite or Recurring:
Recurring

SOWRevision Planned Updated Contractor Comments (optional) BPA Comments (optional)
Work Element Budget (Current Performance Period) $61,272 $20,000

4 Milestones
Sort Type Title Start End Status Modified By Modified Date
A EC Environmental compliance requirements complete 5/1/2010 6/30/2010 Concluded Pamela Nelle 5/21/2010 8:51:41 AM
Description: On-the-ground work associated with this work element cannot proceed until this milestone is complete. Milestone is complete when final documentation is received from BPA environmental compliance staff (completion can be based on pre-existing environmental documentation from BPA).
B Conduct mark-recapture study in Entiat River 7/12/2010 8/14/2010 Concluded Pamela Nelle 5/21/2010 8:57:54 AM
Description: Surveys will be conducted during in summer (July 23 - August 15, or start date will be triggered when discharge is less than 400cfs at the Entiat River gage). The USFWS is responsible for providing from 6 to 9 personnel for the summer survey period as sampling needs dictate. Each survey will be completed within a three week period. Surveys will be conducted following the protocol currently in development. At each selected site, the collected juvenile salmon and steelhead will be PIT tagged to enable life-stage specific survival estimates via recapture in subsequent seining/collection surveys, at rotary screw traps, extended length PIT tag arrays, and mainstem dam PIT tag interrogation facilities. Additionally, each PIT tagged individual will be weighed, measured for length, and life stage identified. Scale samples will be collected from a subset of steelhead collected. Physical site description will include, at a minimum, site length sampled, and proportion of major instream habitat types within this site. Data will include: 1. geographic location of sampled sites (latitude and longitude); 2. total stream length surveyed; 3. number of fish captured by species, scale samples obtained, and life history stage; 4. length and weight for a sample of collected fish; codes for deployed PIT tags, referenced to the individual records of tagged fish; 6. description and sample rate for other deployed marks; 7. recapture information for marked fish when encountered (length, weight, life history stage, and PIT tag code if applicable); and 8. length of site and physical instream habitat description.
C Preliminary data review 9/1/2010 10/10/2010 Concluded Pamela Nelle 5/21/2010 9:48:57 AM
Description: Preliminary review of data collected over the summer to look at number of fish caught, CPUE by capture method. Review of mark-recapture analysis with point estimate and confidence intervals to assess effort needed.
D DELIV Fish population, growth, CPUE data 12/31/2010 Concluded Pamela Nelle 5/21/2010 9:44:48 AM
Description: Surveys will be conducted during two time periods throughout the year: in summer (July 23 - August 15, or start date will be triggered when discharge is less than 400 cfs at the Entiat River gage) and winter/spring (February/March). This contract covers the summer capture period only. The USFWS is responsible for providing from 6 to 9 personnel for the summer survey period as sampling needs dictate. Each survey will be completed within a three week period. Surveys will be conducted following the protocol currently in development. The USFWS are responsible for ensuring that USFWS personnel are at the site in enough time to be ready to begin surveys at the time specified by the USFWS crew leader. The USFWS crew leader will be responsible for ensuring that the capture activities start at the appropriate time in the morning to maximize the time available to complete each capture and tagging event before water temperatures become limiting. This will mean early start times during the summer collection period. At each selected site, the collected juvenile salmon and steelhead will be PIT tagged to enable life-stage specific survival estimates via recapture in subsequent seining/collection surveys, at rotary screw traps, extended length PIT tag arrays, and mainstem dam PIT tag interrogation facilities. Additionally, each PIT tagged individual will be weighed, measured for length, and life stage identified. Scale samples will be collected from a subset of steelhead collected. Physical site description will include, at a minimum, site length sampled, and proportion of major instream habitat types within this site. Quality controlled raw data and quality controlled summarized fish species and size data with GPS locations, will be entered by USFWS and stored in Microsoft Access databases known at Automated Template Modules (ATMs) that will be provided by NOAA Fisheries. Data will be uploaded by December 31, 2010 to NOAA Fisheries using the ATM and notice will be provided to BPA and Terraqua, Inc. when the data has been uploaded. The contractor will be responsible for all quality assurance/quality control steps necessary to ensure that data is properly collected and entered into the ATM. Data will include: 1. geographic location of sampled sites (latitude and longitude); 2. total stream length surveyed; 3. number of fish captured by species, scale samples obtained, and life history stage; 4. length and weight for a sample of collected fish; 5. codes for deployed PIT tags, referenced to the individual records of tagged fish; 6. description and sample rate for other deployed marks; 7. recapture information for marked fish when encountered (length, weight, life history stage, and PIT tag code if applicable); and 8. length of site and physical instream habitat description.

Work Site ID Latitude Longitude State County Province Subbasin
22181 47.723711 -120.349994 Washington Chelan Columbia Cascade Entiat

Primary Focal Species:
Chinook (O. tshawytscha) - Upper Columbia River Spring ESU (Endangered); Steelhead (O. mykiss) - Upper Columbia River DPS (Threatened)
Secondary Focal Species:
None

Title Link
ISEMP - Integrated Status and Effectiveness Monitoring Program http://www.nwfsc.noaa.gov/research/divisions/cbd/mathbio/isemp/index.cfm
PTAGIS Website http://www.ptagis.org/
Study Plan Name Study Plan Owner Protocol State Sample Design Name
Entiat Intensively Monitored Watershed (2003-017-00) v1.0 v1.0 Carol Volk Draft Conduct a mark-recapture study on the Entiat River as part of IMW - US Fish and Wildlife Service (USFWS) v1.0

ID Name Type Optional Customized Based On Status
188 Electro Fishing v1.0 Data Collection No N/A Draft
189 Electro Fishing-Survey Event v1.0 Data Collection No N/A Expired
201 Fish Capture-Angling v1.0 Data Collection No N/A Finalized
202 Fish Capture-Dip Net Supplement to Snorkel v1.0 Data Collection No N/A Finalized
203 Fish Capture-Electro Herding v1.0 Data Collection No N/A Draft
204 Fish Capture-Seining v1.0 Data Collection No N/A Finalized
205 Fish Capture-Snorkel Herding v1.0 Data Collection No N/A Finalized
206 Fish Capture-Survey Event v1.0 Data Collection No N/A Expired
746 Growth Rate for Individual Fish v1.0 Data Analysis/Interpretation No N/A Finalized
214 Habitat-Channel Cross Sections v1.0 Data Collection No N/A Revising
215 Habitat-Channel Transects v1.0 Data Collection No N/A Revising
217 Habitat-Fish Cover v1.0 Data Collection No N/A Finalized
219 Habitat-Large Woody Debris Assessment v1.0 Data Collection No N/A Revising
220 Habitat-Longitudinal Profile-Habitat Units v1.0 Data Collection No N/A Finalized
222 Habitat-Pool Sampling v1.0 Data Collection No N/A Revising
223 Habitat-Riparian Assessment-Canopy, Understory and Groundcover Aerial Estimates v1.0 Data Collection No N/A Finalized
226 Habitat-Site Lay Out v1.0 Data Collection No N/A Revising
228 Habitat-Survey Event v1.0 Data Collection No N/A Expired
234 Macroinvertebrates-Benthic Field Collection v1.0 Data Collection No N/A Finalized
235 Macroinvertebrates-Drift Field Sampling v1.0 Data Collection No N/A Finalized
236 Macroinvertebrates-Survey Event v1.0 Data Collection No N/A Expired
322 Riparian Planting-Survey Event v1.0 Data Collection No N/A Revising
271 Rotary Screw Trap-Efficiency Trial v1.0 Data Collection No N/A Finalized
272 Rotary Screw Trap-Fish Count By Species Group v1.0 Data Collection No N/A Finalized
273 Rotary Screw Trap-Individual Fish Measurements v1.0 Data Collection No N/A Revising
279 Site Establishment-Monumented Site v1.0 Data Collection No N/A Finalized
281 Snorkel within Habitat Units v1.0 Data Collection No N/A Archived
282 Snorkeling v1.0 Data Collection No N/A Expired
286 Spawning Survey-Spawners v1.0 Data Collection No N/A Finalized
287 Spawning Survey-Survey Event v1.0 Data Collection No N/A Finalized
326 Survey Event-Snorkel Observation v1.0 Data Collection No N/A Expired
315 Water Quality-Survey Event v1.0 Data Collection No N/A Expired

Title Category Subcategory Subcategory focus 1 Subcategory focus 2
Classification of Ecological or Geological Attribute Form/Morphology (ID: 31) Habitat Type: Multiple NA
Classification of Ecological or Geological Attribute Habitat Quality (ID: 33) Habitat Type: Multiple NA
Classification of Ecological or Geological Attribute Land Ownership (ID: 34) NA NA
Classification of Ecological or Geological Attribute Land Use (ID: 35) NA NA
Classification of Ecological or Geological Attribute Habitat Type (ID: 192) NA NA
Fish Abundance of Fish (ID: 46) Fish Life Stage: Juvenile - Parr Fish Origin: Natural
Fish Abundance of Fish (ID: 46) Fish Life Stage: Juvenile - Migrant Fish Origin: Natural
Fish Abundance of Fish (ID: 46) Fish Life Stage: Adult - Returner Fish Origin: Both
Fish Abundance of Fish (ID: 46) Fish Life Stage: Adult - Spawner Fish Origin: Both
Fish Abundance of Fish (ID: 46) Fish Life Stage: Adult - Carcass Fish Origin: Both
Fish Age: Fish (ID: 48) Fish Life Stage: Juvenile Fish Fish Origin: Natural
Fish Age: Fish (ID: 48) Fish Life Stage: Adult Fish Fish Origin: Natural
Fish Carrying Capacity: Fish (ID: 51) NA NA
Fish Composition: Fish Species Assemblage (ID: 56) Fish Life Stage: Juvenile Fish Fish Origin: Both
Fish Condition of Life Stage: Fish (ID: 57) Fish Life Stage: Juvenile Fish NA
Fish Density of Fish Species (ID: 59) Fish Life Stage: Juvenile Fish NA
Fish Distribution of Fish Species (ID: 62) Fish Life Stage: Juvenile Fish NA
Fish Diversity of Fish: Change (ID: 64) Fish Life Stage: Juvenile Fish NA
Fish Diversity of Fish: Change (ID: 64) Fish Life Stage: Adult Fish NA
Fish Growth Rate: Fish (ID: 73) Fish Life Stage: Juvenile Fish NA
Fish Length: Fish Species (ID: 75) Fish Life Stage: Juvenile Fish NA
Fish Length: Fish Species (ID: 75) Fish Life Stage: Adult Fish NA
Fish Mortality: Fish (ID: 78) Fish Life Stage: Juvenile Fish NA
Fish Progeny-per-Parent Ratio (P:P) (Productivity) (ID: 86) Fish Life Stage: RANGE: Adult to Juvenile NA
Fish Sex Ratio: Fish (ID: 92) Fish Life Stage: RANGE: Adult to Adult Fish Origin: Both
Fish Stray Rate (ID: 96) Fish Origin: Both NA
Fish Survival: Fish (ID: 97) Fish Life Stage: Juvenile Fish Fish Origin: Both
Fish Survival: Fish (ID: 97) Fish Life Stage: RANGE: Adult to Juvenile Fish Origin: Both
Fish Timing of Life Stage: Fish (ID: 101) Fish Life Stage: Juvenile - Migrant NA
Fish Timing of Life Stage: Fish (ID: 101) Fish Life Stage: Juvenile Fish NA
Fish Mark/Tag Application (ID: 201) NA NA
Fish Origin (ID: 202) NA NA
Fish Scales (ID: 203) NA NA
Fish Weight: Fish (ID: 206) NA NA
Fish Weight: Fish (ID: 206) Fish Life Stage: Juvenile Fish NA
Fish Mark/Tag Recovery or Detection (ID: 381) NA NA
TBD Fish Spawning/Nesting (ID: 507) Fish Origin: Natural NA
Landscape Form & Geomorphology Abundance of Habitat Types (ID: 15) NA NA
Landscape Form & Geomorphology Depth: Bathymetry (ID: 17) NA NA
Landscape Form & Geomorphology Cover (ID: 20) Habitat Type: Overhanging Vegetation NA
Landscape Form & Geomorphology Cover (ID: 20) Habitat Type: Terrestrial Vegetation Zones NA
Landscape Form & Geomorphology Density of Habitat Type (ID: 21) Habitat Type: Multiple NA
Landscape Form & Geomorphology Distance Between Habitat Types (ID: 23) Habitat Type: Multiple NA
Landscape Form & Geomorphology Distribution of Barriers (ID: 24) NA NA
Landscape Form & Geomorphology Distribution of Instream Wood (ID: 25) NA NA
Landscape Form & Geomorphology Edge/Density/Sinuosity (ID: 29) NA NA
Landscape Form & Geomorphology Elevation (ID: 30) NA NA
Landscape Form & Geomorphology Gradient (ID: 32) NA NA
Landscape Form & Geomorphology Length/Width/Area (ID: 36) Habitat Type: Multiple NA
Landscape Form & Geomorphology Depth: Pool (ID: 37) NA NA
Landscape Form & Geomorphology Species Cover (ID: 39) Habitat Type: Multiple NA
Landscape Form & Geomorphology Width to Depth Ratio (ID: 43) NA NA
Landscape Form & Geomorphology Width: Bankfull (ID: 44) NA NA
Landscape Form & Geomorphology Width: Wetted (ID: 45) NA NA
Landscape Form & Geomorphology Depth/Height: Bankfull (ID: 188) NA NA
Landscape Form & Geomorphology Water Surface Elevation (ID: 198) NA NA
tbd Landscape Form & Geomorphology Aquatic or Floodplain Geomorphology: Area (ID: 369) Habitat Type: Channel: Pools NA
tbd Landscape Form & Geomorphology Density of Barriers (ID: 373) NA NA
tbd Landscape Form & Geomorphology Density of Instream Wood (ID: 374) NA NA
tbd Landscape Form & Geomorphology Distribution of Habitat Type (ID: 440) Habitat Type: Channel: Pools NA
Macroinvertebrates Abundance of Macroinvertebrates (ID: 112) NA NA
Macroinvertebrates Composition: Macroinvertebrate Species Assemblage (ID: 113) NA NA
tbd Sediment/Substrate/Soils Composition: Substrate/Soil-Dominant Type (ID: 133) NA NA
Sediment/Substrate/Soils Depth-Fines (ID: 134) NA NA
Time Time: Actual (ID: 120) NA NA
Time Time: Duration (ID: 121) NA NA
Water Quality Conductivity (ID: 154) NA NA
Water Quality Water Temperature (ID: 162) NA NA