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This page provides details of the selected work element.

Work Element Summary PDF
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Contract Number:
46273 REL 23
Contract Title:
2003-039-00 EXP NOAA-MONITOR REPRO IN WENAT/TUC/KAL
Contract Start Date:
4/1/2011
Contract End Date:
3/31/2012
WE ID:
162. Analyze/Interpret Data
Work Element Usage Report
Title:
E: 162 - Analyze and interpret genetic data
Description:
Conduct genetic analysis to estimate the relative fitness of naturally spawning hatchery and natural fish and to describe patterns of genetic variation in Wenatchee River spring Chinook salmon
WE Agreement Type:
Contracted
Deliverable Specification:
Completed analyses will be stored on computers at Northwest Fisheries Science Center in Seattle, WA.
WSE Effective Budget:
$9,000
% of Total WSE Effective Budget:
5.16%
WSE Start:
04/01/2011
WSE End:
03/28/2012
WSE Completion:
03/28/2012
WSE Progress:
Concluded
WSE ID Continued From:
n/a
WSE ID Continued To:
n/a
Finite or Recurring:
Recurring

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Budget History

SOWRevision Planned Updated Contractor Comments (optional) BPA Comments (optional)
1. 46273 REL 23 (04/01/2011 - 03/31/2012) $9,000 $9,000
Work Element Budget (Current Performance Period) $9,000 $9,000

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Milestones

3 Milestones
Sort Type Title Start End Status Modified By Modified Date
A Organize and quality check raw genotype data 4/1/2011 3/28/2012 Concluded Joseph Connor (Inactive) 4/14/2011 11:06:11 AM
Description: Data will be organized, entered, proofed, and stored on computers.
B Conduct analyses 4/2/2011 3/28/2012 Concluded Joseph Connor (Inactive) 4/14/2011 11:06:11 AM
Description: We will use a variety of methods to estimate the relative fitness of hatchery and naturally produced salmon. All of the methods are based on using DNA typing techniques to estimate how many progeny were produced by sampled adults. Some of the methods involve a two step process: determination of a pedigree that is used to explicitly count the number of offspring produced by each sampled parent, followed by statistical analyses of the counts to determine if there are significant differences between hatchery and natural salmon. These two-step methods are appropriate in cases where the population pedigree can be determined unambiguously, because they treat the progeny counts as observed data. In some cases, it may be more efficient to score a larger number of progeny for a smaller number of loci. In these cases, a proportion of the progeny will probably not be assigned unambiguously to a single pair of parents. Smouse et al. (1999) and Morgan and Conner (2001) have developed a statistical method for dealing with this situation when maternity is known, and Ford et al. (2002) have modified this method for the case of two unknown parents.
C DELIV Analyzed genetic data 3/28/2012 Concluded Joseph Connor (Inactive) 4/14/2011 11:06:11 AM
Description: Completed analyses will be stored on computers at Northwest Fisheries Science Center in Seattle, WA.

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Metrics

Implementation Metrics
Metric Planned Actual Contractor Comments Measures HLIs
1464. Primary R, M, and E Focal Strategy [Population Status, Hydrosystem, Tributary Habitat, Estuary/Ocean, Harvest, Hatchery, Predation, Multiple Strategies] Hatchery Hatchery
1472. Primary R, M, and E Type [Status and Trend Monitoring, Action Effectiveness Research, Uncertainties Research, Project Implementation/ Compliance Monitoring] Uncertainty Research Uncertainty Research
1478. Secondary R, M, and E Type [Status and Trend Monitoring, Action Effectiveness Research, Uncertainties Research, Project Implementation/ Compliance Monitoring] Action Effectiveness Monitoring Action Effectiveness Monitoring
1495. Secondary R, M, and E Focal Strategy [Population Status, Hydrosystem, Tributary Habitat, Estuary/Ocean, Harvest, Hatchery, Predation, Multiple Strategies] Population Status Population Status

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Location

<a target='blank' href='https://www.monitoringresources.org/Designer/Design/Index'>Location data for Area of Inference (AOI) should be entered into MonitoringResources.org. Click here to go to that site.</a>
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Focal Species

Primary Focal Species:
Chinook (O. tshawytscha) - Upper Columbia River Spring ESU (Endangered)
Secondary Focal Species:
None

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Environmental Compliance

This work element does not require Environmental Compliance
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RM&E Metadata

Data Repositories:
""
Study Plan:
""
Area of Inference:
""

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