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Proposal Summary

Proposal RESCAT-1990-044-00 - Coeur D'Alene Subbasin Fisheries Restoration and Enhancement

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Archive Date Time Type From To By
9/15/2011 10:26 AM Status Draft <System>
Download 11/29/2011 2:11 PM Status Draft ISRP - Pending First Review <System>
2/16/2012 1:28 PM Status ISRP - Pending First Review ISRP - Pending Final Review <System>
4/13/2012 12:31 PM Status ISRP - Pending Final Review Pending Council Recommendation <System>
2/26/2014 11:40 AM Status Pending Council Recommendation Pending BPA Response <System>

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Proposal Number:
  RESCAT-1990-044-00
Proposal Status:
Pending BPA Response
Proposal Version:
Proposal Version 1
Review:
Resident Fish, Regional Coordination, and Data Management Category Review
Portfolio:
Resident Fish, Regional Coordination, and Data Management Categorical Review
Type:
Existing Project: 1990-044-00
Primary Contact:
Angelo Vitale
Created:
9/15/2011 by (Not yet saved)
Proponent Organizations:
Coeur D'Alene Tribe

Project Title:
Coeur D'Alene Subbasin Fisheries Restoration and Enhancement
 
Proposal Short Description:
This is an ongoing project designed to address the highest priority objective in the Coeur d’Alene Subbasin: to protect and restore remaining stocks of native resident westslope cutthroat trout to ensure their continued existence in the basin and provide harvestable surpluses of naturally reproducing adfluvial adult fish. The objectives are tiered to the Intermountain Province objectives and to the Columbia River Basin goal that addresses resident fish substitution for anadromous fish losses.
 
Proposal Executive Summary:
This is an ongoing project designed to address the highest priority objective in the Coeur d’Alene Subbasin: to protect and restore remaining stocks of native resident westslope cutthroat trout (Oncorhynchus clarki lewisi) to ensure their continued existence in the basin and provide harvestable surpluses of naturally reproducing adfluvial adult fish in Lake Coeur d'Alene and in Lake and Benewah creeks, with stable or increasing population trends for resident life history types in Evans and Alder creeks. The project objectives are tiered to the Intermountain Province Objectives 2A1-2A4 and to the Columbia River Basin Goal 2A that addresses resident fish substitution for anadromous fish losses (Intermountain Province Subbasin Plan 2004). Project objectives are: 1) improve stream habitats; 2) track trends in salmonid demographics and population structure; 3) evaluate effectiveness of habitat restoration; 4) address impacts from non-native introduced fishes; and 5) increase cooperation and coordination among stakeholders.

The management approach being applied is based on identifying and protecting core refugia and expanding restoration outward from areas of relatively intact habitats and populations, coupled with an analytical approach to prioritizing actions based on the degree of impairment to processes operating at the scale of species and ecosystems and the rarity of specific habitat types. Habitat restoration and enhancement activities employ the seven highest ranked strategies for addressing this objective within the Subbasin. Since 2004, 6.8 km of habitats have been made accessible through removal of passage barriers, 457 m of stream habitats have been treated with additions of coarse wood, and 6.2 km of degraded mainstem and tributary habitats and 20.3 hectares of associated floodplain have been treated through large scale channel restoration. In treated areas, we have increased channel length, pool habitats, and wood frequency and volume. Restoration efforts have significantly improved stream bank conditions to reduce erosion potential and reconnected streams to their floodplains. Temperature monitoring in mainstem reaches have revealed the creation of thermal refugia that were the results of our activities. Although we have yet to see direct evidence of a significant response by cutthroat trout, we observed more pronounced positive trajectories in abundance in tributaries of Benewah Creek compared to the watersheds that have received less management intervention in recent years. This may have been a collective response to the large-scale habitat restoration and the aggressive brook trout suppression program that have proceeded since 2004. As additional years of data are collected, further comparisons among watersheds will allow us to better evaluate whether population responses are the result of our remedial actions.

Recently we used watershed assessments and long-term monitoring data as the basis for developing and ranking additional habitat projects to address watershed process impairment for sediment, flood hydrology, riparian and channel function and water quality. The resulting list of projects will be used to negotiate landowner agreements for implementation, and serves as the core of on-the-ground work that is identified in this proposal. Implementation will support recovery of resident and migratory westslope cutthroat trout through restoration and enhancement of landscape processes that form and sustain riverine habitat diversity. We propose to treat 15 km of channel with large wood additions to improve habitat diversity, sediment storage, grade control, habitat cover, and connectivity with floodplains. Riparian habitats associated with 12.7 km of channel are targeted for treatment to restore and/or conserve stream adjacent forests to provide natural recruitment of coarse woody debris over time. Some 19 km of forest roads are targeted for BMP’s to reduce sediment delivery to important spawning and rearing habitats. Finally, 28 barriers are targeted to improve fish passage and open access to 28.3 km of stream habitats. We propose to implement these projects in prioritized sub-watersheds using a hierarchical and/or staircase design within the constraints dictated by landownership. This approach results in multiple treatment replicates at different temporal and spatial scales. Treatments may be applied in a pulsed manner over a 5-10 year period so that some reaches may serve as temporary controls. Specific reaches will also likely remain untreated and serve as permanent controls within each sub-watershed. In this manner, habitat and biological metrics will be examined and compared between treated and control reaches to evaluate local responses to the treatments. As more reaches are treated, biological responses will be examined and compared at larger scales.

It is imperative that we have the capability to reliably track temporal changes in adfluvial spawners given that one of the primary objectives of our recovery efforts is to augment the number of returning adult cutthroat to our watersheds. Trapping modifications made during the last proposal cycle likely explain the greater numbers of adult cutthroat captured in Lake and Benewah creeks in more recent years and the consistency in trapping efforts. Because of the increased number of adults captured in our traps, we were able to obtain a sufficient sample size to initiate a mark-recapture program to estimate spawner abundance beginning in 2009. The ability to obtain rather precise estimates of annual adult abundance should permit us to reliably assess the status of adfluvial spawners in our watersheds and track trends in this high-level indicator over time. Our program also tracks adfluvial juvenile production in Lake and Benewah creek watersheds. Juvenile outmigrant abundance estimates and associated age structure information will permit the derivation of outmigrant per spawner ratios, a watershed-wide indicator that would allow tracking of trajectories in juvenile production in addition to aiding in the assessment of in-stream population response to our restoration actions.

Our monitoring program has also conducted population surveys at established index sites distributed across tributary and mainstem reaches to evaluate cutthroat trout abundance trends at a much finer spatial scale than that attainable using our migrant trap data. Trend trajectories permit an examination of whether conditions appear to be improving or declining at local tributary, watershed, and regional scales. Trend monitoring also permits a description of temporal changes in spatial distributions to assess expansion rates of cutthroat trout populations to examine whether newly created suitable habitat is undergoing colonization. Index site abundance data collected from 2003 to 2009 revealed the presence of temporal trends in age one and older cutthroat trout in our monitored watersheds, though the abundance trajectories varied among systems. We will continue these monitoring efforts during this proposal cycle. Furthermore, we propose to refine the PIT-tagging program we began in 2006 by using half-duplex technology to examine fine-scale movements and utilization of restored habitats by cutthroat trout to describe action effectiveness in a more cost-effective manner.

We initiated a brook trout control program in 2004 in the upper portion of the Benewah watershed to offset unintended benefits of restoration actions for this non-native species and create recruitment bottlenecks at other vital life stages. Our approach was tempered by the desire to maintain connectivity with the lake to promote the migratory life-history variant of our cutthroat trout population and its concomitant high productivity potential. Initially, our control strategy entailed annually removing fish before fall spawning periods by conducting single-pass electrofishing efforts through contiguous mainstem reaches and in tributaries that supported relatively high densities of brook trout. Numerical responses in brook trout to our efforts were examined at index sites throughout the upper watershed. More recently, our suppression approach has refocused tactics toward curbing reproductive success by inhibiting access to suitable spawning habitats through installation of temporary barriers and curtailing shocking efforts to a 2 km mainstem reach where adult densities have been found to be the greatest. If these methods prove successful, we will seek to further reduce the frequency at which we conduct our suppression measures.

Given that recent PIT-tag data suggest that adfluvial juvenile-to-spawner return rates are exceptionally low in our monitored systems, we are placing a stronger emphasis on understanding the processes and mechanisms that are impacting the suitability of rearing habitats in Lake Coeur d’Alene. As an initial step toward this management goal, a collaborative study with the University of Idaho is currently underway to better understand whether predation by northern pike and smallmouth bass is a predominant mechanism regulating juvenile in-lake survival rates. Demographic and dietary data is being collected from both predators during repeated sampling efforts and incorporated into bioenergetic models to estimate the consumption of cutthroat trout. The study will conclude in 2013 and information gained will support the development of actions to reduce this source of mortality. These efforts reflect an understanding gained through project monitoring, that limiting factors in stream environments and the lake must be collectively addressed to recover adfluvial cutthroat trout populations. Implementing actions in the lake to improve juvenile return rates should provide the spawners necessary to seed restored stream habitats and increase in-stream production.

Purpose:
Habitat
Emphasis:
Restoration/Protection
Species Benefit:
Anadromous: 0.0%   Resident: 100.0%   Wildlife: 0.0%
Supports 2009 NPCC Program:
Yes
Subbasin Plan:
Fish Accords:
None
Biological Opinions:
None

Describe how you think your work relates to or implements regional documents including: the current Council’s 2014 Columbia River Basin Fish and Wildlife Program including subbasin plans, Council's 2017 Research Plan,  NOAA’s Recovery Plans, or regional plans. In your summary, it will be helpful for you to include page numbers from those documents; optional citation format).
Project Significance to Regional Programs: View instructions
Columbia River Basin Fish and Wildlife Program (NPCC 2009-09) The activities outlined in this proposal provide partial mitigation for the extirpation of anadromous fish resources from usual and accustomed harvest areas and Reservation lands. Our project directly addresses one of the biological objectives listed to mitigate for anadromous fish losses using fish substitution policy -“Restore and increase the abundance of native resident fish species throughout their historic ranges when original habitat conditions exist or can be feasibly restored or improved (p. 12)”. The actions that our project has implemented or are being proposed to recover native fish are also aligned with several of the basinwide strategies that have been outlined in the Program. Our habitat restoration strategies have been guided by the realization that ecosystem conditions and functioning habitat-forming processes must be restored for our actions to be successful (Habitat Strategy b; p. 15). This is illustrated by the enhancement measures that were implemented in the upper Benewah mainstem to re-establish the natural connectivity between the channel and adjacent floodplain that was needed to recover the riparian forest and improve rearing conditions for trout. In fact, the Program considers re-establishing floodplain connections a primary environmental objective (p. 13) and to potentially be one of the greatest habitat needs to address problems with instream flows and water temperature (p. 16). Our proposed habitat improvements in tributary reaches – e.g., removal of passage barriers and riparian habitat protections and improvements - are also aligned with those considered to be core Program activities to address habitat deficiencies (Habitat Strategy f; p. 16). In total, all of our habitat restoration actions satisfy the Program’s environmental objectives to 1) “Restore and enhance habitat areas that connect to productive areas to support expansion…” and 2) “Protect, enhance, restore, and connect freshwater habitat in the mainstem and tributaries for the life history stages …of naturally spawning resident salmonids (p. 16)”. Actions implemented (i.e., brook trout removal) or proposed (e.g., northern pike control) to address non-native impacts also directly support the Non-native species basinwide strategies – “The Council supports actions that suppress non-native populations that directly or indirectly adversely affect juvenile salmonids…Council urges agencies to modify fishing regulations or harvest limits as appropriate to reduce predation…(p. 18). Columbia River Research Plan 2006 (NPCC 2006-3) We are proposing to conduct mark-recapture studies in our streams using PIT tag technology to better understand 1) The distribution and interconnectedness of sub-populations as related to seasonal and ontogenetic movements among critical habitats; and 2) How restoration actions in select treatment/control tributary pairings influence growth, survival rates, movement, and life-history diversity of cutthroat trout during stream residence (e.g., we expect to obtain a better understanding of whether implemented restoration actions influence the propensity of juveniles to adopt the adfluvial strategy). This proposed study addresses a Critical Uncertainty outlined in Section IV, Part 3 of the Research Plan – “To what extent do tributary habitat restoration actions affect the survival, productivity, distribution, and abundance of native fish populations (p.15), and also attempts to elucidate the concerns expressed in Section IV, Part 7 – “A better understanding is needed of the dominant processes influencing the distribution, interconnection, and dynamics of populations through time and space”, and “Several species have co-occurring life-history types that are poorly understood…(p.18)”. Our research and monitoring program also addresses several of the Critical Uncertainties outlined in Section IV, Part 10 regarding invasive species. For example one of the uncertainties “What is the current distribution and abundance of …introduced non-native species and how is this distribution related to existing habitat conditions (e.g…restoration actions)?” is being addressed by the monitoring component of our brook trout suppression program. Because our habitat restoration goals in the upper Benewah include creating more stable beaver pool complexes, a habitat type that has been shown to be favored by brook trout, our monitoring efforts are tracking the numerical and reproductive response of brook trout to these restoration actions. We are also engaged in a research study to examine the consumptive impact of two non-native fishes – northern pike and smallmouth bass – on cutthroat trout during lake residence. Given that predation by these two species may be a significant limiting factor that is inhibiting the recovery potential of adfluvial cutthroat trout populations, we are addressing the Critical Uncertainty “To what extent will non-native species significantly affect the potential recovery of native fish species …(p.21)”. A Review of Strategies for Recovering Tributary Habitat (ISAB 2003-2) Our proposed tributary habitat restoration efforts target the functionally impaired aquatic and riparian ecosystem processes that were identified in previous watershed-wide limiting factor assessments (e.g., the CWD Loading and Recruitment study, and the Road Condition and Fish Passage Assessment study). This type of an approach to habitat restoration corresponds with that emphasized by the ISAB, “an analysis centered more on an examination of ecosystem processes (e.g., erosion, flow regime, aquatic and riparian interactions, large wood recruitment, and storage and routing of sediment) will produce a more meaningful picture of the conditions likely to influence the productivity of fish communities …(p.27-28)”. Further, our proposed tributary actions are not just site-specific actions but aim to address several habitat deficiencies (e.g., passage, lack of LWD) at a spatial scale that would influence a substantial percentage of the rearing habitat. Also, proposed actions will complement those that have already been implemented (e.g., Benewah mainstem restoration) to continue to improve and connect habitats that serve as critical rearing areas during different time periods (e.g. summer vs. overwintering). Thus, our approach addresses the concern that ISAB has had that “the scale of restoration projects rarely matches the geographical distribution of the fish population that is meant to receive the benefits. Restoration is typically targeted at improving habitat in a stream reach that has been significantly damaged, but rarely do restoration projects affect more than a small fraction of the overall … rearing area (p. 28)”. In order to develop a better understanding of the biological responses to tributary-wide restoration actions, the ISAB recommended using an Intensive Watershed Monitoring (IWM) approach, “Untangling the importance of various factors and predicting how these factors respond to land use actions or restoration efforts can only be accomplished with an intensive monitoring approach (p.45)”. Further, “A…BACI study design often is well suited to address many of the questions amenable to IWM ”, where “treated and untreated sites can be paired at multiple spatial scales…”, and “reference sites for some reach-level projects could be located within the treated watershed (p.46)”. Our proposed implementation and monitoring of tributary restoration actions using treatments and controls at various hierarchical spatial scales (e.g., treated and control reaches to examine local effects nested within a paired treated/control tributary design to examine aggregate biological responses) supports using such an IWM approach, especially in the Benewah watershed. Our proposed monitoring at various spatial scales also aligns with that recommended by the ISAB to detect population responses to the collective contribution of aggregate restoration actions under an IWM approach. On both of our watersheds that are targeted for tributary-wide restoration actions, we track number of spawning adults and outmigrating juveniles, “measures critical to any evaluation of fish response to tributary habitat restoration” and which “should be included at all intensively monitored sites (p.47)”. Further, we are proposing to capture and tag fish captured across reaches in treated and control tributaries, and recapture them during subsequent tributary surveys and at outmigration traps to “provide additional information on survival of fish rearing in different parts of the watershed as well as the effectiveness of individual restoration projects (p. 48)”. Tributary-wide tagging and recapture efforts will permit the evaluation of not only abundance as a response variable to our restoration actions but will also allow us to examine changes in fish distribution and life-stage survival and growth rates, all of which “may be less variable and more sensitive to certain restoration approaches than fish density (p.29)”. ISRP and ISAB Comments on Council’s Proposed High Level Indicators (ISRP and ISAB 2009-2) The biological attributes that we emphasize in our monitoring program align with the Biological High Level Indicators (HLI) proposed by the Council to depict status and trend of focal species at the subbasin level. Specifically, our status and trend monitoring program tracks the abundance of adfluvial spawners in Lake and Benewah watersheds in the Coeur d’Alene subbasin, which addresses a high priority HLI – Abundance of adult fish (HLI 2, p.9). Another high priority HLI is the productivity of wild fish which can be represented by juveniles produced per spawner (HLI 4, p.11). Productivity can also be evaluated by examining mortality at various life-stages, with the smolt-to-adult return rate being a highly recommended productivity HLI for migratory species (HLI 8, p.14). Our monitoring program annually estimates juvenile outmigrant abundance and representatively tags outmigrants to examine return rates, and thus tracks both of these productivity HLI’s. Non-native Species Impacts on Native Salmonids in the Columbia River Basin (ISAB 2008-4) The ISAB considers the effects of non-native species on native fish and their habitats to be equivalent to that of habitat loss, and thus prioritizes actions regarding non-native management with the following recommendations: 1) Research to examine the impacts of non-native predators on native salmonids, and to improve understanding of the effects of competition between non-native and native species; 2) Monitoring to evaluate the effectiveness of control measures; 3) Urging managing agencies to alter fishing regulations that may be enhancing populations of non-natives; and 4) Restoring habitat given that natives have the best chance to persist with non-natives if they have the habitats to which they are best adapted (p.42-43). Our proposed implementation and monitoring program for introduced non-native fish species in the Coeur d’Alene Basin is in accordance with these recommendations and the expressed concerns of the ISAB over the impacts of non-natives on native salmonids. We have been engaged in a brook trout suppression program in stream habitats in the upper Benewah watershed since 2004, and though efforts have been curtailed in recent years, we propose to continue to implement and monitor this control program given that “populations of non-natives are reduced over short-term but rarely eradicated” and thus “control measures need to be applied on a regular basis to inhibit recovery…(p.41)”. Further, to complement our suppression program, habitats in the upper Benewah are being restored to improve their suitability for cutthroat as brook trout numbers are reduced (see ISAB Recommendation 4 above). In addition, we are currently evaluating potential impacts of non-natives on native cutthroat trout during lake residence, and, in accordance with the ISAB conclusion that multi-species research studies are often needed to determine the cumulative impacts of predation (p. 40), we are examining a couple documented salmonid predators instead of just focusing on one. Given the results of this study, our proposed management actions (e.g., regulation changes) and monitoring efforts to address/suppress non-native impacts in the lake are directly reflected in the aforementioned ISAB recommendations. ISRP and ISAB Tagging Report (ISRP/ISAB 2009-1) Our proposed project continues to use PIT-tags to evaluate return rates for juvenile and repeat spawners as we have done in the past. PIT-tags have been considered to be a highly suitable tagging technology to address such questions (Section III, Table 1, p.19). However, we also propose to expand our program to tag and interrogate both juvenile and adult fish in treated/control stream reaches to better understand distribution, seasonal and ontogenetic movements, and survival rates as related to restoration actions in our adfluvial watersheds. These proposed tagging and monitoring actions are supported by the Recommendations outlined in Section II of the Tagging Report, specifically in reference to Question 3 – “How can the Council encourage development and use of innovative tagging technologies relevant to needs?” and Question 4 – “What gaps exist in the Basin’s capacity to collect life history information at the project or program scale..”. One recommendation is to further develop in-stream PIT tag interrogation stations in tributaries to monitor both juvenile and adult movements to better understand migration timing, fate of migrants, survival rates, and life-history strategies (p.12-13). Further, the use of PIT-tag technology and the development of in-stream interrogation systems have been considered appropriate for studying seasonal migration patterns (e.g., juvenile salmonid overwintering behavior), and for examining the variability in the expression of resident and migratory life-history type where both variants co-occur (p. 53). Our project intends to deploy interrogation systems across tributary reaches in both adfluvial watersheds to address such questions. Draft guidance for developing monitoring and evaluation as a Program element of the Fish and Wildlife Program (NPCC 2006-4) Our proposed restoration and monitoring approach in tributary habitats of our two adfluvial watersheds reflects that of an intensively monitored watershed (IMW). Although an IMW approach will require the allocation of more time and personnel efforts for effective implementation, we feel that such efforts are justified given the seeming lack of IMWs tracking the biological response of inland, resident salmonids to restoration approaches at the watershed scale. Indeed, the Fish and Wildlife Program calls for an expansion in the scope and network of IMSs to cover a broader range of environmental conditions (p. 30). Further, the Program also calls for linking with other organizations that already support long-term, intensive watershed monitoring programs like the Bonneville Environmental Foundation (p. 31). Given that our project is currently receiving support from the BEF under the model watershed program, funding for additional proposed biological and habitat effectiveness monitoring would support such coordinated efforts. Coeur d’Alene Subbasin Plan Our program is addressing many of the objectives outlined in the Coeur d’Alene Subbasin Plan through actions designed to evaluate, restore, and protect native cutthroat trout and their habitats. Proposed restoration activities employ the seven highest ranked strategies for addressing this objective within the low elevation watersheds that have been ranked with the greatest deviation from the reference habitat conditions for westslope cutthroat trout within the Subbasin. We are working to improve channel stability, increase habitat diversity, reduce stream temperatures, and improve riparian plant conditions through large woody debris placements, riparian planting, and large scale restoration to restore channel planform and function (Objective 2A2 Strategy a,b,c,e,f,g). We have worked to inventory fish passage barriers and prioritize removal/replacement of barriers within our target watersheds on tribal, public, and private lands (Objective 1B1 Strategy d,f). We have removed 2 passage barriers to date and are focusing efforts on continuing to remove additional barriers (Objective 1B1 Strategy h, Objective 2A2 strategy e). We are working to protect habitat by working with landowners to maintain existing roads and reduce sediment inputs to important spawning areas (Objective 1B1, Strategy a,k; Objective 2A2 Strategy c), working with public and private landowners through outreach activities and assessments to identify areas for habitat protection on their lands (Objective 1B1 Strategy b,c), and continuing to collect habitat data for our study streams (Objective 1B1 Strategy e). We are also continuing to work to collect temperature and other water quality data to assess existing condition that can be used to complete TMDL assessments (Objective 1B1 Strategy g, Objective 1B2). Further, the genetic analyses completed for this project show that relatively pure stocks exist in the target watersheds; only minimal amounts of hybridization with rainbow trout have occurred and some populations show no hybridization at all. By focusing on the conservation and recovery of genetically pure populations, this proposal serves an important role in preserving the genetic integrity of native fishes in the Subbasin as a whole (Objective 2A) and shares the Northwest Power and Conservation Council Fish and Wildlife Program objectives of: maintaining biological diversity in the Upper Columbia River basin; maintaining genetic integrity by preserving wild fish stocks; providing needed habitat protection; and increasing run sizes and resident fish populations by implementing effective restoration projects. Draft Columbia River Basin Monitoring, Evaluation, Research, and Reporting Plan(NPCC 2010-17) and concomitant Implementation Strategy Our proposed project involves data collection and analyses that address 'Status and Trend' and 'Action Effectiveness' monitoring, both of which are monitoring types listed in the MERR Plan. Status and trend monitoring will be conducted to examine spatial and temporal changes in juvenile and adult adfluvial cutthroat trout populations, and action effectiveness monitoring will be conducted to evaluate changes in in-stream productivity (e.g., growth rates, survival rates) of cutthroat trout in response to implemented tributary habitat restoration. Further, our proposed research, monitoring, and evaluation efforts for habitats and for biological responses of both native cutthroat trout populations and non-native introduced species to implemented actions are synonymous with those that were listed as high priority RME needs in the Westslope Cutthroat Trout Implementation Strategy that was developed pursuant to the MERR Plan.
In this section describe the specific problem or need your proposal addresses. Describe the background, history, and location of the problem. If this proposal is addressing new problems or needs, identify the work components addressing these and distinguish these from ongoing/past work. For projects conducting research or monitoring, identify the management questions the work intends to address and include a short scientific literature review covering the most significant previous work related to these questions. The purpose of the literature review is to place the proposed research or restoration activity in the larger context by describing work that has been done, what is known, and what remains to be known. Cite references here but fully describe them on the key project personnel page.
Problem Statement: View instructions

The BPA project 1990-044-00, entitled “Coeur d'Alene Sbubasin Fisheries Restoration and Enhancement”, mitigates for lost fishery resources that are of cultural significance to the Coeur d’Alene Tribe.  This project funds management actions, and research, monitoring, and evaluation (RME) activities associated with these actions, which are carried out by the Coeur d’Alene Tribe’s Fisheries Program to recover populations of westslope cutthroat trout in the Coeur d’Alene basin.

Historically, the Coeur d’Alene Indian Tribe depended on runs of anadromous salmon and steelhead along the Spokane River and Hangman Creek as well as resident and adfluvial forms of trout and char in Coeur d’Alene Lake for subsistence.  Dams constructed in the early 1900s on the Spokane River in the City of Spokane and at Little Falls (further downstream) were the first dams that initially cut-off the anadromous fish runs from the Coeur d’Alene Tribe.  These fisheries were further removed following the construction of Chief Joseph and Grand Coulee Dams on the Columbia River.  Together, these actions forced the Tribe to rely solely on the resident fish resources of Coeur d’Alene Lake for their subsistence needs.  The Coeur d’Alene Tribe is estimated to have historically harvested around 42,000 westslope cutthroat trout (Oncorhynchus clarki lewisi) per year (Scholz et al. 1985).  In 1967, Mallet (1969) reported that 3,329 cutthroat trout were harvested from the St. Joe River, and a catch of 887 was reported from Coeur d’Alene Lake.  This catch is far less than the 42,000 fish per year the tribe harvested historically.  Today, only limited opportunities exist to harvest cutthroat trout in the Coeur d’Alene Basin.  It appears that a suite of factors have contributed to the decline of cutthroat trout stocks within Coeur d'Alene Lake and its tributaries (Mallet 1969; Scholz et al. 1985; Lillengreen et al. 1993).  These factors included the construction of Post Falls Dam in 1906, major changes in land cover types, impacts from agricultural activities, and introduction of exotic fish species.

The decline in native cutthroat trout populations in the Coeur d'Alene basin has been a primary focus of study by the Coeur d'Alene Tribe's Fisheries Program since 1990.  The overarching goals for recovery have been to restore the cutthroat trout populations to levels that allow for subsistence harvest, maintain genetic diversity, and increase the probability of persistence in the face of anthropogenic influences and prospective climate change.  This includes recovering the lacustrine-adfluvial life history form that was historically prevalent and had served to provide  resilience to the structure of cutthroat trout populations in the Coeur d'Alene basin.  To this end, the Coeur d’Alene Tribe closed Lake Creek and Benewah Creek to fishing in 1993 to initiate recovery of westslope cutthroat trout to historical levels.  In 1994, the Northwest Power Planning Council adopted the recommendations set forth by the Coeur d'Alene Tribe to improve the Reservation fishery (NWPPC Program Measures 10.8B.20). These recommended actions included: 1) Implement habitat restoration and enhancement measures in Alder, Benewah, Evans, and Lake Creeks; 2) Purchase critical watershed areas for protection of fisheries habitat; 3) Conduct an educational/outreach program for the general public within the Coeur d’Alene Reservation to facilitate a “holistic” watershed protection process; 4) Develop an interim fishery for tribal and non-tribal members of the reservation through construction, operation and maintenance of five trout ponds; 5) Design, construct, operate and maintain a trout production facility; and 6) Implement a monitoring program to evaluate the effectiveness of the hatchery and habitat improvement projects.  These activities provide partial mitigation for the extirpation of anadromous fish resources from usual and accustomed harvest areas and Reservation lands.

Environmental Conditions in the Target Watersheds

The target watersheds in this proposal have a combined basin area of 34,853 hectares and include 529 kilometers of perennial and intermittent stream channels (Table 1).  The climate has the characteristics of a cold coastal type during the winter, and mild arid interior conditions during the summer.  Average precipitation is approximately 50.8 cm per year, and annual precipitation increases with elevation to approximately 115 cm at 1,220 meters above mean sea level.  The combination of winter weather and snow pack conditions is conducive to rapid melt and runoff in the target watersheds, where the majority of basin area ranges from 915 to 1,370 meters.

The ultimate and proximate control characteristics affecting the target watersheds are consistent with small watersheds in close proximity to one another and many of the general characteristics are shared among the various watersheds.  The watersheds encompass 4 geologic districts, with mafic volcanic flows common in lower elevations and argillite and slate forming the parent material in middle and upper reaches of Alder, Benewah, and Evans creeks, respectively.  Moderate to deep silt loam soils originating from loess, volcanic ash and alluvial deposits are a common feature in the middle reaches of Lake Creek with some deposition evident in both Benewah and Alder creeks as well.  Ten different valley segment types and 21 different channel types are represented in the watersheds, however, 66% of identified reaches are low gradient, meandering, riffle/pool type channels occurring in gently sloping, broad alluvial valleys.

Table 1.  Basin characteristics of the Lake, Benewah, Alder and Evans creek watersheds (From: Lillengreen et al. 1998).

WatershedVariables

Historically, the target watersheds were covered by a mix of forest types.  Fire was an integral part of the ecology of these forests and was the principle disturbance mechanism prior to European settlement.  Fire was used by the Coeur d’Alene people as a means to renew and control growth of unwanted plants in huckleberry and root gathering areas and to keep campsite areas clear of growth (R. Mullen, personal communication 2000).  Thus it is not surprising that the most abundant tree species in the target watersheds are several ones adapted to a landscape periodically disturbed by fire.  Low intensity surface fires occurring at intervals between 2 and 25 years favored ponderosa pine as the dominant species and maintained open stand conditions for much of the lowlands and foothills in the Lake Creek watershed.  Along streams and wetlands, these forest types were associated with cottonwood and aspen, forming a mix of hardwood and conifers.  Fire regimes for the forests of the hemlock series, common in the mid to lower slopes of Benewah and Alder creeks, were typically high intensity, stand replacement fires that occurred at longer intervals of perhaps 50 to 500 years (Agee 1993).  In these forest types, the wetter sites would also have included cottonwood and aspen representing early serial communities (Cooper et al. 1991).  There was likely a very large area of Benewah and Alder creeks that was dominated by seedling and sapling sized white pine, lodgepole pine, western larch and ponderosa pine regeneration that would have originated following one or more large fires prior to 1850 (CDA Tribe 2000).  Also, as much as 8,240 hectares of forested habitats in Benewah, Alder and Evans creeks may have been burned in 1910; the last significant large fire to occur in the project area.  Charcoal fragments and dead roots were recently found in test pits dug in the broad alluvial valley bottom along Benewah Creek, at depths ranging from 10 to 127 cm (DeVries and Fetherston 2008).  This evidence is indicative of the processes affecting forest communities occurring historically (Holocene) throughout the valley bottom and is thought to be representative of forest disturbance mechanisms in the other watersheds.

Natural disturbance and succession regimes in the target watersheds have been severely altered during the last 100 years and are consistent with commodity-induced patterns described for much of the Interior Columbia Basin (USDA Forest Service 1996).  The landscape elements influencing many of the watershed scale processes are reflective of these changes (Figure 1).  Conversion of forestlands for homesteads, pasture, and agriculture, beginning as early as 1910, has enhanced the rain-on-snow phenomenon and accelerated the rate of snow pack depletion to varying extents.  Old (160+years), unmanaged forests had been reduced to a fraction (~10%) of their historic extent by 1933 (Wyckoff 1937).  Currently, 38% of lands in Lake Creek have been converted to agricultural and other uses, although forest conversion has been minimal since the 1950’s.  Benewah (20%), Alder (17%), and Evans (18%) creeks have lesser amounts of forest conversion.  In much of the remaining forested habitats, the old single- and multi-story forests resulting from more or less frequent disturbance by fire have largely been replaced by younger forests resulting from frequent harvest.  The current communities often are more dense and have higher mortality, higher fuel loadings, and higher susceptibility to crown fire than historical communities.  Alteration of riparian/wetland cover types is widespread and has led to localized channel instability, lowering of ground water tables, increases in water temperature, and loss of instream habitat diversity.  More than 80% of historic wetlands in the target watersheds demonstrate some loss of functional value (CDA Tribe 2000).  Geomorphic instability associated with channel incision, alteration of riparian vegetation, and increases in peak flow and sediment loading affect 6.5 miles of stream habitats, primarily in the mid elevation reaches of the Lake and Benewah creek watersheds.  The proliferation of road construction also represents a significant disturbance.  The areas with the highest density of roads occur on lands managed primarily for timber production.  Portions of this road system have been constructed in some of the most sensitive locations (floodplains, and unstable land types) within the watersheds and the density of all road types ranges from 2.11-3.54 km/km2 in the affected watersheds (Table 1).

Historic_Current

Figure 1. Comparison index for current and historic landscape elements in the target watersheds.

The target watersheds are tributaries to Coeur d’Alene Lake, either directly as is the case for Benewah and Lake creeks, or via the Coeur d’Alene River and the St. Maries/St. Joe rivers for Evans and Alder creeks, respectively.  The present day Coeur d’Alene Lake ecosystem is dramatically different from the one known to the Schitsu’umsh (Coeur d’Alene Tribe) and described by Captain John Mullan in 1859 (Mullan 1963).  Prior to construction of the Post Falls Dam in 1906, Coeur d'Alene Lake level was controlled by the elevation of the Lake outlet, the hydraulic capacity of the Spokane River outlet channel above Post Falls, and the amount and timing of inflow.  In the absence of Project operations, the lake level would typically begin to recede in early June at a rate of 1 - 1.5 feet per month, reaching the minimum natural Lake elevation of 646 m (2,120 feet) by August or early September.  Since the early 1940’s the dam has been operated to hold the lake surface elevation at approximately 648 m (2128 feet) after spring runoff subsides (usually by mid June), then in early September to draw the lake down to a minimum level of approximately 646 m by late November or early December.  Project operation affects native fish production, especially native salmonids, in three ways (Coeur d’Alene Tribe 2005).  First, the operation of the Post Falls HED alters the natural flood pulse process by inundating the lake/riverine/wetland ecosystem, altering the physical, thermal, and chemical nature of the habitats, and reducing the suitability of available habitats for native fishes.  Second, life histories of native fishes require connectivity of migration corridors between the lake, rivers and tributaries.  Inundation from Project operation seasonally reduces connectivity by physically, thermally, and chemically altering these migration corridors.  Finally, the inundated lake and river habitats maintain a food web of non-native fish species that prey upon and compete with native species; native salmonids are especially vulnerable.

Status of Westslope Cutthroat Trout

Westslope cutthroat trout (WCT; Oncorhynchus clarki lewisi) are native to the watersheds of the Coeur d’Alene Subbasin (hereinafter referred to as the Subbasin), and, within the Subbasin, have been found to express three different life history strategies as outlined by Northcote (1997): fluvial-resident, fluvial-adfluvial, and lacustrine-adfluvial (Table 2).  The fluvial-resident life history generally completes all stages of its lifecycle in small tributaries.  The fluvial–adfluvial life history rears in small tributaries, matures in larger river habitats of the Coeur d’Alene, St. Joe, and St Maries rivers, then returns to natal tributaries to spawn.  The lacustrine-adfluvial life history (hereinafter referred to as adfluvial) rears in small tributaries, matures in Coeur d’Alene Lake (CDA Lake), then returns to natal tributaries to spawn.  Each life history strategy shares a cyclic sequence of migrations (trophic, refuge, and reproductive) among respective habitats used for feeding, wintering, and spawning.

Historically WCT were the dominant salmonid in streams of the Subbasin (Scholz et al. 1985; Behnke and Wallace 1986).  Although data describing historical abundances of WCT are scarce, historical oral accounts suggest that densities in watersheds that drain into CDA Lake were high.  The lacustrine-adfluvial life-history variant, whose migratory behavior permitted the exploitation of optimal rearing habitats in the more productive lake environment, conferred a large size at maturation with concomitant high levels of fecundity.  Currently, it is not uncommon for lacustrine-adfluvial spawners in the Subbasin to attain lengths that exceed 450 mm (Vitale et al. 2008; Vitale et al. 2009).  Further, the migratory life-history strategy of the adfluvial variant likely increased the probability of inter-basin straying of adult spawners.  Genetic studies have revealed low levels of genetic differentiation among sampled populations in the Subbasin (Fst of 0.04) compared with other WCT populations across the subspecies range (Fst of 0.333) (Spruell et al. 1999; Corsi et al. 2010).  Evidently, a level of interconnectedness among putative subpopulations in watersheds of the Subbasin existed in the past.

Currently, the CDA Tribe’s conservation strategy for WCT in the Subbasin emphasizes the recovery of the migratory, productive adfluvial variant and the maintenance of connectivity among subpopulations to promote a metapopulation structure that is resilient to natural (or introduced) disturbances.  In light of this conservation strategy, it is recognized that populations could be at risk to potential hybridization with introduced rainbow trout (Oncorhynchus mykiss) if not isolated by barriers (Shepard et al. 2005).  However, recent genetic analyses revealed relatively low rates of genetic introgression between WCT and rainbow trout in the subpopulations analyzed, with evidence of only infrequent episodic hybridization events (Spruell et al. 1999; Corsi et al. 2010).  Thus, the current status of WCT stocks in the Subbasin indicate a relatively pure metapopulation structure with minimal hybridization, and consequently, a strategy that permits unrestricted movement within and among our target watersheds will be sustained.

Though WCT are still widely distributed in the Subbasin, life-history strategies have been lost in some watersheds and, in other watersheds, the spatial distribution has been contracted and fragmented (Intermountain Province Subbasin Plan 2004).  For example, trapping studies conducted by the Tribal Fishereies Program in the mid 1990’s indicated that the migratory life-history variants are no longer prevalent in either the Alder or the Evans creek watersheds (Lillengreen et al. 1993; Lillengreen et al. 1996).  In addition, though WCT are currently distributed widely across both mainstem and tributary reaches in Evans Creek, WCT in Alder Creek have been relegated to lower mainstem reaches, and in both Benewah and Lake creek watersheds, WCT distributions are disjunct with densities in upper tributary reaches much higher than those in mainstem reaches.  Both non-native introductions (Dunham et al. 2002; Shepard 2004; Quist and Hubert 2005) and habitat loss, such as high summer rearing temperatures in mainstem habitats (Dunham et al. 1999; Paul and Post 2001; Sloat et al. 2001; de la Hoz Franco and Budy 2005) likely explain the distributional patterns observed for WCT in our watersheds.

Table 2. Summary of life history strategies for westslope cutthroat trout in four target watersheds in the Coeur d’Alene Subbasin (after Northcote 1997).  T=Tributary, R=River, L=Lake.

LifeHistory1

Established Limiting Factors

There are a number of limiting factors that have contributed to a decline in productivity for native resident/adfluvial fish stocks within the target watersheds, as reflected in the QHA analysis completed for the Subbasin Plan.  Habitat factors include alteration of stream flow patterns, increased sediment production and delivery to streams, localized instances of channel instability, reduction in overall habitat diversity/complexity, and elevated summer water temperatures in some mainstem reaches (Intermountain Province Subbasin Plan 2004).  In two of the target watersheds, competition with introduced, non-native brook trout (Salvelinus fontinalis) is an additional limiting factor.  The magnitude and severity of impacts varies greatly between the watersheds, which are ranked 1st, 3rd, 16th, and 21st (out of 36), with regard to their deviation from the reference habitat conditions for westslope cutthroat trout in the subbasin (Intermountain Province Subbasin Plan 2004).  Many of these major limiting factors are addressed by this project and are discussed more fully below.

Sediment Production and Delivery

Lake, Benewah and Alder creeks are identified on the 1998 303(d) list of impaired water bodies.  Water quality limited reaches have been identified because increased sediment loadings to the respective streams reduce the quality of habitats necessary for fish spawning and overwinter survival.  Of these watersheds, only the Lake Creek watershed has an established Total Maximum Daily Load (TMDL) allocation for nonpoint source pollutants (USEPA 2005).  The sediment budget constructed for the watershed shows agricultural sheet and rill erosion to be the largest contributor to the stream system, accounting for 78% of the total delivery to streams (CDA Tribe 2000).  Using measured flow, turbidity, and TSS data, the Lake Creek sediment TMDL was calculated with an overall load allocation to nonpoint sources of 4,878.0 tons/year.  This load allocation corresponds to a 56 percent reduction in existing nonpoint source sediment loadings.

The environmental impact of forest roads are well known and widely documented.  Mills et al. (2007) and others summarized the environmental effects of forest roads on aquatic resources as 1) restriction of fish, flow, sediment and debris passage at stream crossing structures; 2) input of sediment in amounts over background; 3) alteration of aquatic habitat from sediment, increased fines in stream sediment, and, for roads adjacent to streams, directly filling and eliminating habitat; and 4)change in hydrology and stream flow when roads intercept rainfall and groundwater and alter rate of water delivery to streams.  Lee et al. (1997) found that road density had the highest correlation of any anthropogenic action on the population status of cutthroat trout.  Increasing road density has a negative affect on the environmental baseline condition.  Within the target watersheds, road density (mean=3.07 km/km2) and riparian road density (mean=0.38 km/km2) exceed the mean values for managed watersheds analyzed by Kershner et al (2004).  Several subbasins within the target watersheds also have road densities that exceed the threshold (2.5% of basin area) where fine sediment in spawning gravels increased above natural levels (Cederholm et al., 1982).

A recent inventory and assessment of non-paved roads to predict sediment detachment and delivery was completed in 2008 as a critical step in prioritizing restoration opportunities for addressing the effects of sediment in streams for the target watersheds (Middel et al., 2009).  For study roads, Benewah Creek has the highest predicted sediment delivery at 286.5 tons/yr, followed by Lake Creek (84.05 tons/yr), Alder Creek (5.94 tons/yr) then Evans Creek (3.93 tons/yr).  In addition to road surface condition, stream crossings were also evaluated in terms of their potential for contributing excess sediment to the streams. The Evans Creek watershed had 25% of the crossings in need of immediate attention while the Lake Creek watershed had the least, with only 6% of the crossings in need of immediate attention. 

Coarse Woody Debris

Researchers have attributed wood volume and/or frequency as influential in processes operating at the channel reach, valley bottom, and landscape scales.  Many studies indicate that most pools in moderate-gradient, cobble- and gravel-bed forest streams are either formed by or strongly influenced by wood (Andrus et al. 1988; Robison and Beschta 1990; Abbe and Montgomery 1996).  Within several of our target watersheds lack of large woody debris, both within the stream channel and the adjacent floodplain, has been identified as a contributor to poor habitat quantity and quality in low-order streams which represent the core refugia for spawning and early life stage rearing. 

A survey of 74.1 km of 2nd order tributaries and adjacent riparian habitats in the target watersheds identified considerable variability in wood loading and function among the watersheds, reflective of the recent management legacy in adjacent riparian forests (Miller et al. 2008).  The frequency distribution by size class for coarse woody debris (CWD) indicated that most of the coarse wood (mean = 65%, range = 58-74%) came from small diameter trees (<25.4 cm [10 in] diameter) and nearly all the wood (95%) was less than 50.8 cm in diameter.  Our data also indicate that only a small proportion (about 3% overall) of in-stream wood pieces form pools, with the probability of providing habitat function increasing with piece diameter.  The longitudinal percentage of pool habitat in the surveyed reaches was generally low, ranging from 11.4% to 38.9%.  By comparison, the 7-year status review on PACFISH/INFISH long-term monitoring sites with similar channel geometry reported that on average 48.7% and 53.8% of managed and unmanaged reaches, respectively, were comprised of pool habitats (Henderson et al. 2005).  Our data also suggest that any reduction in wood abundance translates directly to a reduction in number of pools. 

Only Evans and Alder Creeks had volumes, 18.80 m3/100 m and 13.80 m3/100 m, that meet or exceed the median values gathered from other studies of managed and unmanaged sites in forest types similar to our study area (Young et al. 2006; Fox and Bolton 2007).  Wood volumes in Benewah and Lake Creeks are significantly lower than the median values from comparable studies.  The cumulative frequency distribution for wood abundance by volume indicated that only 19% and 8% of channel length in Benewah and Lake Creeks, respectively, meets a threshold of 9 m3/100 m.  The reach scale distributions of CWD we observed in the Lake and Benewah watersheds are indicative of impaired recruitment processes.  This limiting factor can be addressed through a combination of management actions, including additions of CWD, adoption of alternative management practices for some riparian areas, and conservation of areas with well-functioning riparian wood recruitment processes (Beechie and Bolton 1999; Roni et al. 2002).

Fish Barriers

WCT move upstream and downstream throughout their lives seeking out spawning, rearing, feeding, resting, and refuge areas.  As they move through the stream, they encounter road-stream crossings in the form of fords, culverts, or bridges.  The ability of a WCT to pass a culvert depends on a variety of factors including the depth of the pool downstream of the culvert, the velocity and depth of water in the culvert, the height the fish has to jump to enter the culvert, the size of the fish, the number of passage attempts, distance of migration, and the presence of large wood and other debris in the culvert (Reiser et al. 2006).  Removal of barriers increases the habitat available for fish to utilize and ensures the survival of different life histories.  Barriers can isolate segments of the population and can perhaps increase local extirpation (Cahoon et al 2005).  Loss of spawning habitat is critical because it could lead to decreased fish production. 

In 2008, a study was completed examining fish passage at stream crossings in important spawning and rearing areas within the target watersheds (Middel et al. 2009).  The stream crossings were surveyed using methods described in Clarkin et al (2006).  A coarse screen developed by Region 1 of the Forest Service was used along with the modeling program FishXing (1999) to rate the crossings in terms of barrier status.  It was found that each watershed had greater than 30% of all fish bearing stream crossings acting as total barriers.  Benewah and Lake Creeks had over 40% of stream crossings acting as juvenile barriers.  Nearly 40% of all stream crossings in Evans Creek provide full passage while approximately a 25% of stream crossings were completely passable in the other three watersheds.  It should be noted that recent fish passage study in Montana showed that fish passage can actually occur through culverts that are rated as barriers due to the conservative nature of Fish Xing and the limited knowledge regarding swimming and jumping abilities for different sizes of many species of fish (Cahoon et al. 2005). 

Temperature

The legacy of land-use activities in the target watersheds have contributed to elevated stream temperatures through various mechanisms.  Streamside riparian canopy closure has been reduced in each of the target watersheds through past harvest regimes with substantial impacts to the older coniferous stands.  Channel incision, in part due to the loss of riparian and floodplain vegetation, also has contributed to elevated summer water temperatures due to a reduction in overbank flooding and concomitant loss of groundwater recharge from floodplain storage during summer base flows (Brunke and Gonser 1997).  Channel incision has affected approximately 2.4 and 8 km of upper mainstem habitats in Lake and Benewah creeks, respectively.  The lack of deep pools in mainstem habitats, in part explained by channel incision and the paucity of in-stream LWD, also offers minimal refuge to high ambient stream temperatures during summer growing periods for WCT.

Generally, our watersheds exhibit a longitudinal gradient of increasing temperature in a downstream direction, with upper 2nd and 3rd order tributaries providing more favorable rearing temperatures for WCT than lower mainstem reaches during mid-summer periods.  For example, summer temperatures typically remain below 17oC, a value above which is considered sub-optimal for cutthroat trout growth (Bear et al. 2007), more than 95% of the time in upper reaches of Lake Creek tributaries and in monitored tributaries in the upper Benewah watershed, whereas temperatures commonly exceed this threshold value more than 50% of the time in downstream main-stem reaches (Firehammer et al. 2011).  Given the consistently higher densities of cutthroat trout observed in tributary than in mainstem habitats, the differences in mid-summer rearing temperatures between tributary and mainstem reaches likely explain in part the distributional patterns of cutthroat trout observed in both watersheds (Dunham et al. 1999; Paul and Post 2001; Sloat et al. 2001; de la Hoz Franco and Budy 2005).

Although main-stem temperatures in our watersheds are generally unsuitable for WCT during summer rearing periods, cold-water inputs from groundwater sources are present in floodplain habitats in some of the broad, unconstrained valley reaches.  Monitored springbrooks within the unconstrained reach of the upper Benewah mainstem have consistently displayed temperature signatures during summer months that were much cooler than those recorded in adjacent mainstem habitats.  Active channel restoration that reconnects mainstem reaches with the adjacent floodplain should increase the influence of these cold-water groundwater sources and promote hyporheic dynamics that moderate main channel summer temperatures and create thermal refugia for WCT.

Non-native Interactions

Non-native brook trout, a species that has been found to negatively impact native cutthroat trout where sympatric populations occur (Griffith 1988; Adams et al. 2001; Dunham et al. 2002; Peterson and Fausch 2003; Peterson et al 2004; McGrath and Lewis Jr. 2007), have been found only in the Alder and Benewah creek watersheds.  Brook trout are the predominant salmonid in Alder Creek, and in the upper watershed where brook trout densities are the highest, cutthroat trout are rarely captured suggesting their probable displacement (Dunham et al. 2002).  Compared with Alder Creek, the distribution of brook trout in the upper Benewah watershed overlaps with that of WCT, where they are often out-numbered by the native salmonid.  Further, brook trout densities are substantially more modest in upper Benewah than in the Alder watershed.  Despite the lower densities of brook trout in the Benewah watershed, systems that have been degraded from their natural condition (e.g., loss of riparian vegetation) may be more vulnerable to invasion by brook trout than those that have been relatively undisturbed (Shepard 2004).  As such, implementing a brook trout removal program in the Benewah watershed in conjunction with improving rearing conditions for WCT through habitat restoration should provide a better opportunity for WCT to recover and persist in the presence of low brook trout abundance.

Currently, the mechanisms and processes that may be impacting adfluvial WCT during migratory periods and residence in CDA Lake are largely unknown.  Multiple migrations by both juvenile and adult fish into riverine and lacustrine habitats throughout their life cycle increases the potential for temporal and spatial overlap with non-native predators and competitiors in CDA Lake, and in the Coeur d’Alene, St. Joe, and St. Maries Rivers.  In previous studies conducted on CDA Lake (Rich 1992; Anders et al. 2003), WCT were found to be a principal prey item in northern pike stomachs.  In addition to the large size that can be attained by northern pike and their piscivorous feeding habits, the spawning behavior of northern pike increases the opportunity for temporal and spatial overlap with both juvenile and adult WCT migrants.  Though consumption rates have not been quantitatively evaluated, northern pike may substantially impact numerical abundances of WCT during periods when WCT are migrating through shallow-water shoreline habitats of CDA Lake.  Introduced Chinook salmon (O. tshawytscha), smallmouth bass (Micropteurs dolomieu), and largemouth bass (M. salmoides) are other species that may potentially prey upon WCT in the lake.

Other trophic level interactions may also be impacting growth and survival rates of WCT in CDA Lake.  Cutthroat trout have been reported to occupy colder mid-water, pelagic habitats during summer residence in lacustrine environments, avoiding warm surface waters, and frequenting littoral zones largely during cooler spring and fall periods (Baldwin et al. 2002; Nowak and Quinn 2002).  Similarly, Nilsson and Northcote (1981) found cutthroat trout to feed mostly in mid-water pelagic zones, utilizing littoral areas for foraging primarily when sympatric populations of the more aggressive rainbow trout were present.  Consequently, there is potential for niche overlap to occur between WCT and non-native kokanee in mid-water pelagic zones of CDA Lake during the summer, though competitive mechanisms have not adequately been examined.  To better evaluate the overall strategy of our recovery program, it is imperative that juvenile-to-adult survival rates are better understood given the potential for trophic-level interactions to impact population demographics during lake residence.


What are the ultimate ecological objectives of your project?

Examples include:

Monitoring the status and trend of the spawner abundance of a salmonid population; Increasing harvest; Restoring or protecting a certain population; or Maintaining species diversity. A Project Objective should provide a biological and/or physical habitat benchmark by which results can be evaluated. Objectives should be stated in terms of desired outcomes, rather than as statements of methods and work elements (tasks). In addition, define the success criteria by which you will determine if you have met your objectives. Later, you will be asked to link these Objectives to Deliverables and Work Elements.
Objectives: View instructions
Improve Stream Habitats (OBJ-1)
Support recovery of resident and migratory westslope cutthroat trout through restoration and enhancement of landscape processes that form and sustain riverine habitat diversity. Benchmarks as follows: S1: Reduce sediment delivery by 75% from hydrologically connected road segments; S2: Treat all culverts with high risk of failure; H1: Reduce length of hydrologically connected road segments to less than 0.2 mi/sq. mi.; H2: Increase the frequency of overbank flows (=1.5-2yr flood) in incised tributary/mainstem reaches; R1: 70% of stream adjacent habitat able to meet instream wood loading criteria over 150 years; R2: 75% canopy cover in 2nd order streams; C1: 70% of available habitat to meet CWD loading of 6m3/100m; C2: Treat all culverts blocking adult passage and other high/mod priority culverts on a case by case basis; W1: Less than 16°C in tributaries, less than 18°C in mainstem; less than 25% exceedance of 17°C during rearing; >3°C differential in mainstem pools.

Track Status and Trends in Westslope Cutthroat Trout Demographics and Population Structure (OBJ-2)
Track abundance, productivity, spatial distribution, and life-history diversity at various spatial scales (e.g., watershed, tributary, reach) and for various life stages to assess progress toward attaining management benchmarks. Benchmarks are as follows:

(P)roductivity: P1 - Increasing 10-year trend in adfluvial spawners (i.e., two generations) with a trend variance less than 0.05; P2 - Increasing 10-year trends in stream densities; P3 - Greater than 10% juvenile to first time spawner return rate; P4 - Greater than 50% return rate for repeat spawners.

(S)patial distribution: S1 - Cutthroat trout are distributed across reaches within tributaries, across tributaries spatially distributed within watersheds, and across watersheds within the Basin.

(D)iversity: D1 - Ensure that life-history diversity, with emphasis on the adfluvial variant, is expressed within the Basin. D2 - Ensure suitable corridors exist to maintain connectivity among critical habitats.

Evaluate Effectiveness of Habitat Restoration (OBJ-3)
Conduct monitoring to track trends in physical habitat attributes to assess progress toward achieving or maintaining the benchmarks that were outlined in Objective 1.

Conduct monitoring to evaluate whether cutthroat trout populations positively respond to habitat restoration actions and are progressing toward achieving the benchmarks listed under Objective 2.

Address Impacts from Non-native Introduced Fishes (OBJ-4)
Maintain low levels of brook trout abundance in the upper Benewah watershed that achieve the following performance benchmarks:
(1) Brook trout densities of age 1 and older fish less than 7.5 fish / 100m, and of mature adult fish less than 2 fish / 100m.
(2) 10-year brook trout density trends that are not significantly increasing.
(3) Absence of a detectable reproductive compensatory response in mature brook trout resulting from suppression strategies.

Address impacts (e.g., predation, competition) from non-native species in Lake Coeur d'Alene to achieve the in-lake survival benchmarks of 10% and 50% for return rates of juvenile and repeat spawning cutthroat trout, respectively (See Objective 2)

Increase Coordination and Participation Among Stakeholders (OBJ-5)
Conduct outreach and education activities in conjunction with restoration and monitoring efforts to effectively connect people affected both directly and indirectly to project work and build community support for restoration and management initiatives. Benchmarks include: reach more than 4000 stakeholders annually through combined outreach strategies; involve more than 1000 students/teachers annually in education programs; and increase enrollment of Tribal members in natural resource management related degree programs at the post-secondary level.


The table content is updated frequently and thus contains more recent information than what was in the original proposal reviewed by ISRP and Council.

Summary of Budgets

To view all expenditures for all fiscal years, click "Project Exp. by FY"

To see more detailed project budget information, please visit the "Project Budget" page

Expense SOY Budget Working Budget Expenditures *
FY2019 $1,542,723 $1,538,299

General $1,540,120 $1,535,703
General - Within Year $2,603 $2,596
FY2020 $1,588,020 $1,588,020 $1,579,228

General $1,588,020 $1,579,228
FY2021 $1,588,020 $1,539,069 $1,509,869

General $1,539,069 $1,509,869
FY2022 $1,588,020 $2,687,375 $1,501,768

General $2,687,375 $1,501,768
FY2023 $1,588,020 $1,991,056 $2,790,359

General $1,991,056 $2,790,359
FY2024 $1,657,893 $2,818,036 $2,088,488

Fish Accord - Coeur d'Alene $2,818,036 $2,088,488
General $0 $0
FY2025 $4,526,884 $4,526,884 $943,103

Fish Accord - Coeur d'Alene $4,526,884 $943,103

* Expenditures data includes accruals and are based on data through 31-Mar-2025

Actual Project Cost Share

The table content is updated frequently and thus contains more recent information than what was in the original proposal reviewed by ISRP and Council.

Current Fiscal Year — 2025
Cost Share Partner Total Proposed Contribution Total Confirmed Contribution
There are no project cost share contributions to show.
Previous Fiscal Years
Fiscal Year Total Contributions % of Budget
2024 $455,316 (Draft) 14% (Draft)
2023 $525,800 21%
2022 $1,343,586 33%
2021 $279,489 15%
2020 $645,951 (Draft) 29% (Draft)
2019 $372,894 (Draft) 19% (Draft)
2018 $153,100 9%
2017 $83,272 5%
2016 $224,520 12%
2015 $75,731 5%
2014 $177,890 11%
2013 $72,200 4%
2012 $695,500 31%
2011 $466,200 23%
2010 $314,871 17%
2009 $63,725 4%
2008 $446,254 22%
2007 $549,989 29%

Discuss your project's recent Financial performance shown above. Please explain any significant differences between your Working Budget, Contracted Amount and Expenditures. If Confirmed Cost Share Contributions are significantly different than Proposed cost share contributions, please explain.
Explanation of Recent Financial Performance: View instructions
There have been no significant differences between working budget, contracted funds and project expenditures to report. 2006-2010 expenditures have constituted 99.2% of contracted funds. Contracted funds have increased 3.4% annually on average since the 2006 project review. Confirmed project cost shares have totaled $1,841,039 from FY2007-2011. Annual project cost shares during this time have ranged from $63,725-$549,989 and averaged 26% of the contracted budget. Major cost shares supporting habitat restoration and monitoring have come from EPA, the Coeur d'Alene Tribe, USFWS, Bonneville Environmental Foundation, the University of Idaho, and the National Fish and Wildlife Foundation.
Discuss your project's historical financial performance, going back to its inception. Include a brief recap of your project's expenditures by fiscal year. If appropriate discuss this in the context of your project's various phases.
Explanation of Financial History: View instructions
BPA Project 1990-044-00, entitled Implement Fisheries Enhancement Opportunities on the Coeur d’Alene Indian Reservation has been underway since 1990. Our financial records appear somewhat different than those reported in the proposal template above. Total project expenditures have been $16,338,844 (1990-2012). The history of contract awards is as follows: 6/2011-5/2012 $1,503,000 6/2010-5/2011 $1,502,526 6/2009-5/2010 $1,470,548 6/2008-5/2009 $1,553,435 6/2007-5/2008 $1,349,376 6/2006-5/2007 $1,255,952 7/2002-5/2006 $3,826,396 9/1990-7/2002 $3,877,611 Annual expenditures averaged $352,510 between the inception of the project and 7/2002 during early implementation of the project, when project activities consisted primarily of: 1) baseline resource inventory and assessment; 2) development of project priorities, goals and objectives; 3) preliminary restoration project planning; and 4) early implementation of primarily passive habitat enhancement efforts. Annual expenditures have since averaged $1,246,123 between 2002 through the end of the current contract (5/2012) as project activities shifted to: 1) development and implementation of comprehensive monitoring (status and trend, and effectiveness) strategies; 2) implementation of extensive, active and passive habitat restoration and enhancement efforts; and 3) refinement of restoration project planning in response to monitoring results and lessons learned.

Annual Progress Reports
Expected (since FY2004):22
Completed:12
On time:11
Status Reports
Completed:80
On time:46
Avg Days Early:1

                Count of Contract Deliverables
Earliest Contract Subsequent Contracts Title Contractor Earliest Start Latest End Latest Status Accepted Reports Complete Green Yellow Red Total % Green and Complete Canceled
10885 27934, 33533, 37842, 42560, 47583, 52937, 57531, 61299, 65197, 69003, 72851, 76243, 76828 REL 1, 76828 REL 4, 76828 REL 9, 76828 REL 16, 76828 REL 22, 84053 REL 3, 84053 REL 9 1990-044-00 EXP CDA FISHERIES HABITAT RESTORATION Coeur D'Alene Tribe 07/01/2002 05/31/2026 Issued 80 553 33 0 30 616 95.13% 2
BPA-5602 PIT Tags - Coeur D'Alene Res. Fisheries Habitat Bonneville Power Administration 10/01/2006 09/30/2007 Active 0 0 0 0 0 0 0
BPA-3391 PIT Tags - Coeur d'Alene Tribe Bonneville Power Administration 10/01/2007 09/30/2008 Active 0 0 0 0 0 0 0
BPA-4311 PIT Tags - Coeur D'Alene Reservation Habitat Bonneville Power Administration 10/01/2008 09/30/2009 Active 0 0 0 0 0 0 0
BPA-4976 PIT Tags - Coeur D'Alene Res Fisheries Habitat Bonneville Power Administration 10/01/2009 09/30/2010 Active 0 0 0 0 0 0 0
BPA-5701 PIT Tags - Coeur D'Alene Res. Fisheries Habitat Bonneville Power Administration 10/01/2010 09/30/2011 Active 0 0 0 0 0 0 0
BPA-6341 PIT Tags - Coeur D'Alene Res. Fisheries Habitat Bonneville Power Administration 10/01/2011 09/30/2012 Active 0 0 0 0 0 0 0
BPA-10796 Tag Readers - CDA Reservation Fisheries Habitat Bonneville Power Administration 10/01/2018 09/30/2019 Active 0 0 0 0 0 0 0
Project Totals 80 553 33 0 30 616 95.13% 2

Selected Contracted Deliverables in CBFish (2004 to present)

The contracted deliverables listed below have been selected by the proponent as demonstrative of this project's major accomplishments.

Contract WE Ref Contracted Deliverable Title Due Completed
10885 E: 175 COPY: Deliverable complete 9/27/2005 9/27/2005
10885 H: 29 COPY: Deliverable complete 12/16/2005 12/16/2005
10885 G: 30 COPY: Deliverable complete 1/31/2006 1/31/2006
10885 J: 47 COPY: Deliverable complete 5/30/2006 5/30/2006
10885 K: 47 COPY: Deliverable complete 5/30/2006 5/30/2006
33533 I: 29 Completed project 11/23/2007 11/23/2007
33533 D: 115 Completed Survey and Management Recommendations 5/30/2008 5/30/2008
37842 G: 30 Complete Channel Construction 9/26/2008 9/26/2008
37842 E: 175 Completed Design Report 3/31/2009 3/31/2009
37842 D: 115 Final report of survey results and management recommendations 5/30/2009 5/30/2009
37842 AA: 99 Summary of Education/Outreach Activities 5/30/2009 5/30/2009
37842 F: 175 Channel Design Report 5/30/2009 5/30/2009
42560 D: 30 Complete Restoration Design Elements 8/14/2009 8/14/2009
42560 H: 30 Complete channel construction 10/30/2009 10/30/2009
42560 E: 47 Vegetate Disturbed Areas 4/30/2010 4/30/2010
42560 F: 47 Plant 6,040 Deciduous Trees and Shrubs 4/30/2010 4/30/2010
42560 C: 114 Project Descriptions/Agreements 5/14/2010 5/14/2010
42560 I: 47 Vegetate Disturbed Areas 5/14/2010 5/14/2010
47583 Q: 157 Abundance Estimates of Salmonids in Target Watersheds 10/15/2010 10/15/2010
47583 W: 157 Description of beaver dam characteristics, stability and physical habitat influence 10/29/2010 10/29/2010
47583 T: 162 Abundance and Life-History Information for Adfluvial Westslope Cutthroat Trout 2/28/2011 2/28/2011
47583 U: 162 Trend Analyses of subbasin and watershed scale salmonid abundance 2/28/2011 2/28/2011
47583 AA: 162 Analyses of physical habitat and temperature dynamics at reference and treatment sites 2/28/2011 2/28/2011
47583 Z: 160 Updated database of physical habitat attributes, temperature and discharge measurements 5/27/2011 5/27/2011
47583 P: 158 PIT Tag Juvenile Cutthroat in Lake and Benewah Creeks 5/27/2011 5/27/2011
47583 M: 70 Install Migration Traps in Lake and Benewah Creeks 5/27/2011 5/27/2011
47583 O: 70 Operational PIT Tag Systems 5/27/2011 5/27/2011
52937 R: 157 Indices of abundance of salmonids in target watersheds. 7/30/2011 7/30/2011
52937 Y: 157 Measurement of thermal heterogeneity in Benewah Creek 8/26/2011 8/26/2011
52937 J: 190 Remove Brook Trout from Benewah Creek 9/30/2011 9/30/2011

View full Project Summary report (lists all Contracted Deliverables and Quantitative Metrics)

Discuss your project's contracted deliverable history (from Pisces). If it has a high number of Red deliverables, please explain. Most projects will not have 100% completion of deliverables since most have at least one active ("Issued") or Pending contract. Also discuss your project's history in terms of providing timely Annual Progress Reports (aka Scientific/Technical reports) and Pisces Status Reports. If you think your contracted deliverable performance has been stellar, you can say that too.
Explanation of Performance: View instructions
The project's recent (2005-present) deliverable status has an average completion rate of 94% (170 of 180 deliverables). The annual deliverable status has ranged from 89% to 97% during this time frame. The issued contract for the period June 2011 through May 2012 is on track to meet or exceed the average completion rate of the previous six years. The project proponent views the contracted deliverable performance as acceptable (meeting expectations), given the inherent uncertainty in planning and implementing complex projects that can occasionally be affected by uncontrolled variables. Incomplete deliverables have generally been carried forward into subsequent contracts and have been completed in nearly all instances. A total of 17 reports are available on the BPA publications webpage (https://efw.bpa.gov/searchpublications) related to this project. These annual progress reports and planning documents provide an uninterrupted project chronology for the period 1990 through 2009 and include a complete and detailed accounting of project activities, habitat inventory and analysis, and status and trend and effectiveness monitoring results. Collectively, these documents provide the conceptual framework and guidance for implementing a comprehensive restoration and enhancement program with provisions for evaluating project effectiveness in several watersheds located within the Coeur d'Alene Subbasin. To a large extent, the lessons learned and project findings are transferable to other BPA funded projects being implemented on the Coeur d'Alene Reservation and help inform other management efforts occurring in the larger subbasin. The most recent published report describes work completed during the period 1/2008 through 12/2009. A more recent progress report is currently in preliminary draft form but will likely not be published until early 2012.

  • Please do the following to help the ISRP and Council assess project performance:
  • List important activities and then report results.
  • List each objective and summarize accomplishments and results for each one, including the projects previous objectives. If the objectives were not met, were changed, or dropped, please explain why. For research projects, list hypotheses that have been and will be tested.
  • Whenever possible, describe results in terms of the quantifiable biological and physical habitat objectives of the Fish and Wildlife Program, i.e., benefit to fish and wildlife or to the ecosystems that sustain them. Include summary tables and graphs of key metrics showing trends. Summarize and cite (with links when available) your annual reports, peer reviewed papers, and other technical documents. If another project tracks physical habitat or biological information related to your project’s actions please summarize and expand on, as necessary, the results and evaluation conducted under that project that apply to your project, and cite that project briefly here and fully in the Relationships section below. Research or M&E projects that have existed for a significant period should, besides showing accumulated data, also present statistical analyses and conclusions based on those data. Also, summarize the project’s influence on resource management and other economic or social benefits. Expand as needed in the Adaptive Management section below. The ISRP will use this information in its Retrospective Review of prior year results. If your proposal is for continuation of work, your proposal should focus on updating this section. If yours is an umbrella project, click here for additional instructions. Clearly report the impacts of your project, what you have learned, not just what you did.
All Proposals: View instructions
  • For umbrella projects, the following information should also be included in this section:
  • a. Provide a list of project actions to date. Include background information on the recipients of funding, including organization name and mission, project cost, project title, location and short project summary, and implementation timeline.
  • b. Describe how the restoration actions were selected for implementation, the process and criteria used, and their relative rank. Were these the highest priority actions? If not, please explain why?
  • c. Describe the process to document progress toward meeting the program’s objectives in the implementation of the suite of projects to date. Describe this in terms of landscape-level improvements in limiting factors and response of the focal species.
  • d. Where are project results reported (e.g. Pisces, report repository, database)? Is progress toward program objectives tracked in a database, report, indicator, or other format? Can project data be incorporated into regional databases that may be of interest to other projects?
  • e. Who is responsible for the final reporting and data management?
  • f. Describe problems encountered, lessons learned, and any data collected, that will inform adaptive management or influence program priorities.
Umbrella Proposals: View instructions

Introduction

The recent major accomplishments of this project are described in this section.  These accomplishments are organized under headings consistent with the project objectives described in this proposal, which include: 1) improve stream habitats; 2) track trends in westslope cutthroat trout demographics and population structure; 3) evaluate effectiveness of habitat restoration; 4) address impacts from non-native introduced fishes; and 5) increase coordination and participation among stakeholders.  To avoid redundancy in presentation, several key initiatives to improve stream habitats are described under the heading “Evaluate Effectiveness of Habitat Restoration” to emphasize the role of this type of monitoring in informing the approach and direction of management actions over different spatial scales and timeframes (i.e. adaptive management).  The representative deliverables for this recent work are referenced by contract and work element where appropriate.

Objective 1: Improve Stream Habitats

Prioritizing Restoration

The approach to restoration in the target tributaries has evolved over time to more successfully translate watershed analyses, resource inventories and assessments and monitoring results into the management actions needed to achieve project goals (Contract 42560/WE C114; Contract 33533/WE D115; Contract 37842/WE D115).  The recent project history reflects a shift from opportunistic implementation of restoration projects to a more systematic approach for prioritizing management actions consistent with the refugia approach described by Reeves et al (1995) and Frissell and Bayles (1996) and a multispecies, analytical approach (Beechie and Bolton 1999).  The former approach is rooted in the idea of protecting the best first and expanding restoration outward from areas of relatively intact habitats and populations.  The approach acknowledges studies that indicate that restoration efforts focused near sources of colonists result in more-rapid species recovery (Huxel and Hastings 1999) and that recovery time increases with distance from colonization sources (Gore and Milner 1990).  The later approach has been implemented as more detailed knowledge of factors limiting recovery have been developed and focuses on suites of landscape processes considered necessary to conserve multiple species.

A fundamental goal of the Coeur d’Alene Tribe Fisheries Program is to identify restoration and enhancement needs and opportunities in areas that have the greatest potential to improve habitat and translate into positive biological responses to recover depressed native cutthroat trout populations.  Within this context we are interested in answering the question, “What are the highest priority restoration actions at the watershed scale and at finer spatial scales?” To help structure the process of identifying and prioritizing restoration actions we utilized a four-step process that connects watershed analyses and status and trend monitoring to prioritization through 1) setting clear goals and objectives for restoration activities, 2) selecting a prioritization scheme that is consistent with the goal, 3) using watershed assessments to identify restoration actions, and 4) prioritizing the list of actions (Beechie et al. 2008).  These steps fit within the broader restoration process that we have used in developing other programmatic plans, such as the Fisheries Program Management Plan (Lillengreen et al. 1999) and Research Monitoring and Evaluation Plan (Vitale et al. 2002), which includes restoration planning, implementation, and evaluating the success of restoration actions (Figure 1).

 Figure 1

Figure 1.  Diagram of the restoration process and the steps used for identifying and prioritizing restoration actions that are nested within this broader process.

Restoration Goals and Objectives

Ranked aquatic resource goals for the Coeur d’Alene Subbasin were developed as part of the NPPC Subbasin Planning process.  The highest priority goal included protection and restoration of harvestable surpluses of naturally reproducing adfluvial adult fish from Lake, Benewah, Evans and Alder creeks and other populations well-distributed in tributaries throughout the basin (Intermountain Province Subbasin Plan 2004).  The restoration goal that is corollary to this subbasin goal is to “support recovery of resident and migratory westslope cutthroat trout through restoration of landscape processes that form and sustain riverine habitat diversity, while managing the riparian/aquatic interface for both wildlife and limited domestic uses that do not conflict with protection of water quality, public health and the fisheries resource”.  This goal is stated in the context of landscape and aquatic processes that drive habitat degradation and species declines, as well as socioeconomic considerations, so as to be both realistic and explainable.

We developed specific process-based objectives and criteria for describing impairment to watershed process functions that would be useful in identifying the restoration actions needed to achieve the above goal and in prioritizing those actions (Table 1).  The watershed processes that were considered included sediment, flood hydrology, riparian and channel processes, water quality and biological productivity.  For each of these processes, criteria were developed that described the degree of impairment relative to the watershed or sub-watershed scale.  It was difficult to find suitable criteria in the peer-reviewed literature for all of these functions.  Where existing criteria were not available, we developed definitions based on results from our long-term status and trend monitoring (e.g., for biological productivity) and based on the range of measured values identified during watershed assessments (e.g., for sediment, flood hydrology, riparian and channel).  Ratings of high and moderate indicated a degree of process impairment warranting restoration action.

Table 1.  Restoration objectives for watershed process functions and definitions for process impairment criteria; ratings of high (H); moderate (M), and low (L) indicate the degree to which each impaired process alters riverine habitat conditions.

 

Table 1

Prioritization Approach

There are a variety of available prioritization approaches, and selecting an approach that matches restoration goals and assessment capabilities is helpful in linking restoration goals, watershed assessments, and prioritization into a coherent strategy for river restoration (Beechie et al. 2008).  We selected a prioritization approach consistent with the logic approach (decision support system) described by Lewis et al. (1996), SRSRC (2004) and Cipollini et al (2005).  This approach utilizes an array of semi-quantitative tools for prioritizing restoration actions, including, information developed from watershed assessments that describe causes of impairment, biological benefits associated with classes of restoration actions, as well as estimated costs.  The fundamental objective is to assemble and weigh information considered important to setting priorities (Cipollini et al. 2005).  The approach is considerably more flexible than others that were reviewed and allowed for incorporating values important to the Coeur d’Alene Tribe and local landowners.

A decision support system score sheet was developed to obtain a relative “score” for each planned project.  Criteria were drafted to reflect the values embodied in the goal statement as well as the constraints of implementing projects within the target watersheds.  The criteria include consideration of species that benefit from restoration, the degree to which restoration actions address causal processes, uncertainty associated with project actions and habitat/biological responses, and how the project accommodates local socioeconomic goals.  The criteria are scored on either a discrete or continuous scale, as well as being weighted, then summed to a total score.  Total scores are useful in differentiating projects (Table 2).

In the initial use of this approach, we selected just two of the focal watersheds, Benewah and Lake creeks, to develop a list of projects and conduct the preliminary prioritization of restoration efforts.  These watersheds were chosen because they both have resident and adfluvial westslope cutthroat trout and relatively more restoration actions have been implemented compared with Alder and Evans creeks.  In proceeding with this approach we recognize the importance of watershed scale restoration as well as the value in maintaining a treatment/control approach to monitoring action effectiveness.  Within these two watersheds, 12 subbasins were delineated so that priorities could be viewed and implemented at multiple scales.  These subbasins encompass the distribution of cutthroat within the watersheds and contain the critical habitats for spawning and early life stage rearing.  The Lake Creek watershed includes three subbasins: Bozard, Upper Lake, and WF Lake; while the Benewah Creek watershed includes nine subbasins: Bull, Coon, Hodgson, Schoolhouse, SF Benewah, WF Benewah, Whitetail, Whittrock, and Windfall.

Identifying Restoration Actions

Watershed assessments and long-term monitoring data collected as part of this BPA funded project, provided most of the information needed to identify and prioritize restoration actions (Table 3).  The most recent assessments included 1) large wood recruitment inventory and analysis which examined existing in-stream wood loads, stream conditions and the wood recruitment capacity of riparian forests associated with more than 74 km of streams (Miller et al 2008); and 2) inventory and analysis of road conditions and fish passage associated with 540 km of forest roads and more than 400 stream crossings (Duck Creek Associates 2009).  These assessments provided the critical understanding of natural potentials as they relate to sediment, flood hydrology and riparian and channel function, and the degree to which restoration efforts can move habitats toward a re-expression of natural habitat capacity and quality (Poff and Ward 1990; Ebersole and Liss 1997; Frissell et al. 1997; Pess et al. 2003).

Table 2.  Example of a project score sheet to facilitate prioritization of a list of restoration actions.

 Table 2

Table 3.  Summary of assessments and inventories used to identify the condition of watershed processes and function.

Table 3

In order to translate the watershed assessment results into a list of necessary restoration actions, we first prepared a summary to clearly identify which processes or functions were most impaired and most responsible for habitat degradation (Table 4).  The summary identifies the degree of impairment for each of the subbasins in the Lake and Benewah creek watersheds consistent with the definitions for process impairment that were developed and described above.  The summary of impairments was then translated into a list of restoration needs, which includes types of restoration actions, their locations, and approximate levels of effort needed to address each of the impaired processes (Table 5).

Prioritizing Restoration Actions

Prioritization of restoration actions is an important part of the overall exercise to ensure that limited restoration funds can be focused on actions that will have the greatest impact and locations that will receive the greatest benefit. To this end, the delineated subbasins were further ranked by relative restoration priority according to the overall level of impairment, proximity to restored habitats and the potential for increasing fish production (Table 5).  A weighted impairment value was calculated for each subbasin, wherein a moderate impairment rating was scored as 1 point and a high rating was scored as 2 points and the scores were summed.  Subbasins with the highest impairment values were considered higher priorities for restoration.  Where impairment values for subbasins within the same watershed were equal, the rankings were modified to favor priority for subbasins in closer proximity (connectivity) to restored habitats or with greater potential for increasing fish production.  This potential was indicated by the “current productivity distance”, defined as the difference in mean maximum/minimum cutthroat trout densities within the subbasin.

Table 4.  Summary of process impairments identified by watershed assessment in subbasins within the Lake Creek and Benewah Creek watersheds. Subbasins lacking assessment data are indicated by ND.

Table 4

Table 5.  Summary of restoration needs and relative restoration priority by subbasin within the Lake Creek and Benewah Creek watersheds. Proximity to restored mainstem habitat is indicated as near (N) or far (F), where applicable.

Table 5

A list of spatially explicit projects was developed to meet the stated process objectives for each of the highest priority subbasins (6 in Benewah Creek and 3 in Lake Creek).  A total of 105 projects were identified and prioritized in these subbasins.  Only two percent of the ownership in these project areas is Tribal, while 49 percent is owned by three private companies and an additional 39 percent is owned by 18 individual landowners (Figure 2).  Therefore, sharing information generated through this project and coordinating planning, implementation and monitoring, with the goal of increasing participation with affected landowners, becomes a critical component of meeting our goals and objectives for recovery.  Cumulatively, these projects affect 41.1 km of stream and riparian habitat (29.7 km in Benewah Creek, 11.4 km in Lake Creek), with fish passage projects expected to result in a significant short- and long-term response. The list of projects will be used over the next several years to negotiate landowner agreements for implementation, and serves as the core of on-the-ground work that is identified in this project proposal.

Figure 2

 

Figure 2. Number and distribution of planned restoration projects by ownership and project type.

Instream CWD Loading and Recruitment Processes

We completed a survey of 74.1 km of 2nd order tributaries and adjacent riparian habitats in 2008 (Contract 33533/WE D115) with the goal of identifying conditions with respect to coarse wood recruitment (Miller et al. 2008).  The objectives of this study were to:

  1. Measure existing instream wood loads and stream conditions to better understand fisheries production potential as it relates to riparian stand condition and wood recruitment potential;
  2. Measure the wood recruitment capacity of riparian forests using growth, yield and recruitment models to examine the potential effects of management prescriptions on stream habitats; and
  3. Draft a planning document to identify priorities for conservation and restoration based on the study results.

Riparian habitats in the study area were classified into relatively homogenous polygons according to variables describing channel confinement, channel slope, vegetation type and composition, and lidar-derived canopy height and canopy cover.  Field data was then collected for a representative sample constituting 26.6% of stream habitats in the study area to describe riparian vegetation, instream wood characteristics and channel attributes.  Non-surveyed riparian stands were populated with tree lists derived from field-sampled stands for each structural class.  We utilized several computer models to analyze the effects of three different management scenarios representing a range of current and potential future riparian conditions over a 150 year planning window.  To model growth, yield and mortality we used the Forest Vegetation Simulator (FVS) model, developed and maintained by the USDA Forest Service.  Data from 113 sampled stands containing 4,259 individual tree list records were used to drive simulations for silvicultural prescriptions associated with each management scenario at a 5-year time interval.  For the wood recruitment modeling effort, we chose a spatially explicit model for in-stream wood recruitment and accumulation that adapted existing riparian wood recruitment algorithms (e.g., Sobota et al. 2006, Van Sickle and Gregory 1990) into a GIS framework, so that model outputs could be incorporated into other GIS-based models to 1) track in-channel wood abundance based on integration over time of wood inputs and wood depletion by decay and fluvial transport (e.g., Benda et al., 2003); and 2) relate wood-piece characteristics and channel attributes to the likelihood and type of habitat function.

We found that wood volumes in Benewah and Lake creeks are significantly lower than the median values from comparable studies (Young et al. 2006; Fox and Bolton 2007) and the observed reach scale distributions of CWD are indicative of impaired recruitment processes.  In this study, we used spatially referenced survey data and spatially distributed models to characterize wood-loading potential and management effects at multiple scales.  We found differences in predicted tree mortality between stand types, which translate to stand-specific recruitment rates.  We found differences in habitat-forming potential with piece size and channel attributes, which translate to differences in the effects of wood between reaches.  The site-specific aspects of these channel systems suggest that effects of riparian management will also vary reach to reach in terms of both the contribution of CWD to the channel (Figure 3) and in the frequency of wood-formed habitats (Figure 4).  Additional detailed results from this assessment are described in the objectives section of this proposal under the headings Technical Background and Emerging Limiting Factors.

Figure 3

Figure 3. Comparison of modeled wood volume by channel segment under the No management and Idaho Forest Practices Act (IFPA) scenarios.  Scatter in these plots indicates differences in the proportional increase in wood abundance between segments and differences in the pattern of points between graphs indicate differences between management alternatives.  Points falling below the one-to-one line indicate a loss of modeled in-stream wood over time (from decay of current wood) and points above the line indicate an increase in modeled wood over time, from mortality of riparian stands.  The graph on the right compares modeled wood abundance at 150 years under the no-management and IFPA scenarios.  The greater the distance from the one-to-one line, the greater is the reduction of modeled wood abundance associated with thinning of the riparian stands.

Figure 4

Figure 4. Model predictions of basin average wood-formed pools for three management alternatives at 150 years (Miller et al. 2008).

We suggest that this limiting factor can be addressed through a combination of management actions, including additions of CWD, adoption of alternative management practices for some riparian areas, and conservation of areas with well-functioning riparian wood recruitment processes.  Furthermore, the availability of both fish density and habitat data in our study area provide avenues for use of forest growth and recruitment model results for conservation and restoration planning following the general recommendations of Beechie and Bolton (1999) and Roni et al. (2002).  From the perspective of habitat quality, management and restoration activities have two primary goals: 1) to develop and maintain well functioning riparian-channel interactions that promote a diverse channel environment with high-quality habitat; and 2) to improve conditions where current habitat quality is low.  The appropriate activities to achieve these goals vary with channel and riparian zone attributes and current condition.  We identified three primary attributes, each divided into nominal rankings, to aid in determination of appropriate actions and in setting of priority levels, as follows:

1. Fish abundance, defined as the average surveyed number of fish (cutthroat trout) per unit channel length.  Rankings are:

  • High abundance: > 10 fish/100m
  • Moderate: 5 – 10 fish/100m
  • Low = < 5 fish/100m

2. Current in-stream wood abundance, in terms of wood volume per unit channel length.  Rankings are:

  • High abundance: > 9 m3/100m
  • Low: < 9 m3/100m

3. Sensitivity to riparian management (thinning from below) in terms of the modeled difference for in-stream wood abundance (in terms of number of pieces per unit channel length) in 150 years with no thinning (no-management scenario) and with riparian thinning consistent with Idaho-Forest-Practices rules.  Rankings are:

  • High sensitivity: > 30 pieces/100m difference
  • Moderate: 30 – 10 pieces/100m difference
  • Low: < 10 Pieces/100m difference

Each attribute is associated with specific types of management and restoration actions and unique combinations of these three attributes and their rankings provide 18 categories (Table 6).  Management and restoration actions appropriate for the rankings in each category are then identified, with four resulting management categories: conservation, riparian management, addition of large woody debris with riparian management, and no action.  Priority levels are based on the potential to maintain high and moderate fish abundances in light of sensitivity of future wood loading to riparian management.  We have added two additional variables to further condition management guidelines and prioritization:

  1. Channel distance to the nearest reach with high fish abundance. Channel reaches with low fish abundance, but within 500 meters of reaches with high fish abundance, receive higher priority rankings than those further than 500 m. This conditional change is based on the potential for fish from high-abundance reaches to utilize these nearby reaches as habitat conditions improve.
  2. Modeled wood abundance under the no-management scenario at 150 years. Reaches for which modeling indicates low potential for future wood recruitment even under no management, identified by low wood abundance (< 9 m3/100m) at 150 years, default to the high priority rating.

Table 6.  Categorical summary of large wood recruitment results based on unique combinations of nominal attribute rankings with recommendations for management actions and priority.

Table 6

Applying this strategy to the target watersheds provides detailed maps of management options and conservation/restoration priorities that can be addressed systematically at either the watershed or sub-watershed scale and be coordinated with implementation of other management actions.  The overall effect of this recent study is to strengthen the restoration approaches we have adopted by applying detailed knowledge of factors limiting recovery and focusing management activities on suites of landscape processes considered necessary to conserve multiple species.

Forest Road Condition and Fish Passage Assessment

We completed an inventory and assessment of 539 km of forest roads and 407 stream crossings (Contract 37842/WE D115) in portions of four target watersheds in 2009 (Middel et al., 2009).  The streams targeted for this survey included the most important habitats for spawning and rearing of westslope cutthroat trout in the respective watersheds.  Roads in the survey area are variously managed by tribal, state, county, and private landowners.  These roads provide access to a wide variety of activities important to Tribal members including access to traditional hunting and gathering areas, recreation, cultural/spiritual practices, timber harvesting, and access to private property.  The objectives of the study were to: 1) evaluate sediment contributions from roads that are within proximity to critical areas for spawning and rearing habitat; 2) identify any complete or partial barriers that may affect the ability of native westslope cutthroat trout to access key spawning and rearing habitats; and 3) draft a planning document to identify priorities for restoration based on the study results.  The methods and key results are summarized below, with additional detailed results described in the objectives section of this proposal under the headings Technical Background and Emerging Limiting Factors.

In this study, we applied both the State of Oregon and the State of Washington methodologies to help determine the current and near-term condition of roads in the four study watersheds.  The State of Oregon’s “Rapid Watershed Risk and Current Condition Survey” (Mills et al. 2007), was used to determine the current and near-term condition of roads by rating road segment attributes and features with attention priority codes.  These codes range from 1 to 5, with 1 indicating a need for immediate road work and 5 indicating that the road is in good working condition.  Different environmental indicators were examined including location of critical areas, locations of hydrologically connected roads, stream crossing washout potential, condition of stream crossing structures, and condition of the road prism.  Hydrologic connectivity occurs when water intercepted by the road prism flows from a road directly to a stream or waterway.  The second model used for surveying roads was the Washington Road Surface Erosion Model (WARSEM) (Dube et al. 2004).  This model predicts relative long term soil erosion and sediment delivery from roads.  In this case, road segments that contributed sediment to stream were those that drained to an active stream channel, drained to a gully that drained to an active stream channel, or road segments that drained to areas that were located less than 200 feet from a stream.  Geology, topography, precipitation, land use, and road characteristics are important variables used to estimate sediment delivery in WARSEM and these were derived using local values.

The results of the two different methodologies were combined to guide planning efforts for restoration.  Priority road segments were identified for inspection and potential repair based on a positive hydrologic connectivity classification and an attention priority rating of 1 or 2.  There were 4.7 miles of roads that fit this category.  High sediment delivery road segments were also assigned high priority.  A range of best management practices were identified to address these road condition priorities, including installation of cross drains, culvert replacement, reducing road gradient, increasing vegetation on cutslopes, and improving surface conditions.  Reducing hydrologic connectivity of roads to streams is an especially important objective of forest road management and one that depends on engineering strategies which effectively divert road surface runoff to the forest floor where it can be filtered before entering waterways.  We identified all such opportunities for “disconnecting” existing road segments from the drainage network.  Furthermore, the list of BMP’s we identified was evaluated as to their potential effectiveness in reducing sediment delivery as a means of further prioritizing future restoration actions.  For example, WARSEM predicts a greater than 60% reduction in sediment loading to streams when resurfacing from pit run to gravel and keeping all other attributes the same.  This type of resurfacing has no effect on the cutslope sediment delivery.  Another scenario we explored involved upgrading from a native surface to a gravel surface.  In these instances, WARSEM predicts an overall reduction from 209 mean tons/annually to 45 mean tons/annually.  When we applied a BMP of providing 90% - 100% cover to cut slopes, either by applying a hydro-mulch or straw on all cut slopes with less than 90% cover, WARSEM predicted a 36% reduction in sediment loading to creeks.  Road gradient has a noticeable effect on sediment loading to creeks and we considered the effect of reducing road gradient on segments that were greater than 10%.  WARSEM predicted a 60% reduction in sediment loading to creeks when road gradient was reduced from > 10% to 5 – 10%.  The compilation of data derived from this evaluation exercise was particularly useful in identifying process-based objectives for sediment reduction.  Additionally, it provides important information for monitoring the application of BMP’s such that estimates of sediment delivery can be tracked and modeled to allow for before and after comparisons of project effectiveness.

Physical stream data and culvert information was collected at each of 407 sites to assess fish passage.  A fish passage screen developed by the US Forest Service Northern Region (Hendrickson 2008) was used to do a preliminary assessment of fish passage for adult and juvenile cutthroat trout at each stream crossing that was determined to be fish bearing.  Fish bearing streams were defined as having less than 20% gradient and more than 3 feet bankfull width (WDFW 2000).  This methodology was chosen primarily because it was developed by targeting resident-adult and resident-juvenile westslope cutthroat passage at existing road-stream crossings.  Where the Northern Region Fish Passage Screen proved inconclusive, we utilized methodology from the National Inventory and Assessment Procedure for identifying Barriers to Aquatic Organisms Passage at Road-Stream Crossings (NAIP) developed by Clarkin et al. (2005).  The data gathered for these inconclusive sites, 70 crossings in total, were input into the computer software FishXing (Beta V.3) to model fish passage.  For modeling purposes, fish lengths of 23 cm for adults and 10 cm for juveniles were used.  Low flow and high flow discharge was estimated using USGS regional regression equations developed for Idaho.  A system was developed to rank each potential fish bearing crossing by watershed.  A combination of barrier status and extent of habitat upstream was used to rank the identified barriers as low, moderate, or high priority for replacement.  Fish barriers were ranked first according to the results of FishXing.  If the percent of passable flows for adults was less than 50%, the crossing was given a higher priority.  For those crossings not modeled in Fish Xing, a crossing that was identified as being both an adult and juvenile barrier was given higher priority than a crossing identified just as a juvenile barrier.  Next, the amount of stream length upstream of the barrier that was less than 20% grade was determined.  If this length was more than 1500 meters, a crossing was given a higher priority.  Twenty four out of 121 identified barriers were given a high priority ranking (Figure 5).  Development of this specific list of priorities will help to identify key landowner contacts to develop on-the-ground projects and to facilitate project implementation in areas where barrier removals should illicit the greatest biological responses.

Figure 5 

Figure 5.  Percentage of low, moderate, and high priority stream crossings per watershed based on total number of fish barriers identified during the 2008 fish passage assessment.

Objective 2: Track Status And Trends In Westslope Cutthroat Trout Demographics And Population Structure

Adfluvial Spawner Abundance

It is imperative that we have the capability to reliably track temporal changes in adfluvial spawners given that one of the primary objectives of our recovery efforts is to augment the number of returning adult cutthroat to our adfluvial watersheds.  As such, sampling techniques for capturing and tagging fish have been improved since 2004, and as a result, we have been able to obtain more accurate and precise spawner abundance estimates.  Beginning in 2005 in Lake Creek and in 2007 in Benewah Creek, we replaced the fixed-weir trap design with a floating weir design to intercept upriver migrating spawners (Tobin 1994; Stewart 2002; Photo 1).  Owing to its flexible nature, the floating weir can more effectively accommodate high discharge and debris loading than the former design, and was able to be fished at a greater range of flows in our watersheds throughout migratory periods.  However, because brief periods of high spring discharge were still observed to depress panels below the water surface permitting upriver migrants to pass and giving rise to variable capture efficiency across years (e.g., Lake Creek, 2005-2008; Table 7), additional changes were respectively made to floating weirs in Lake and Benewah creeks in 2009 and 2010 to further improve performance.  Floating weirs were modified so that the panels could be manually elevated or lowered with a hoist to maintain their position above the water surface at a much greater range of discharge levels than before.  Modifications were also made to the fixed-weir traps used to intercept post-spawn outmigrating adults in Lake and Benewah creeks in 2005 and 2007, respectively.  Removable pop-out panels were incorporated into the trap design to alleviate hydrostatic pressure on the trap during high flow events (Photo 2).  Although trap performance is sacrificed during brief high flow events when pop-outs are removed, structural trap damage and consequent lost trapping opportunities during rebuilding efforts are prevented.  Trapping modifications likely explain the greater numbers of adult cutthroat captured in Lake Creek in more recent years and the consistency in trapping efforts since 2009, and, also explain, in part, the recent increase in adults captured in Benewah Creek since 2007 (Table 7).

Because of the increased number of adults captured in our traps, most notably as ascending adults at our floating weirs, we were able to obtain a sufficient sample size to initiate a mark-recapture program to estimate spawner abundance.  Beginning in 2009, we began to opercle punch every ascending adult intercepted at our floating weirs, and from the recapture of a considerable percentage of these marked fish as post-spawn outmigrants in our fixed weir traps, have been able to obtain rather precise abundance estimates in recent years (Table 7).  Currently, our migrant traps are installed at rkm 6.0 on the mainstem of Lake Creek and at river kilometer (rkm) 14.5 on the mainstem of Benewah Creek.  In both watersheds, traps have been installed downriver of principal spawning tributaries and of most of the recently implemented and projected habitat restoration projects.  In Benewah Creek, however, several perennial spawning/rearing tributaries exist below our trap location, and as a result spawner abundance estimates obtained at the current trap location do not reflect the production potential of the entire watershed.  As a result, we are currently in the process of installing a floating weir at the mouth of Benewah Creek that has the capability to trap both ascending and descending spawners.  This trap is expected to be operable in the spring of 2012 and our marking protocol will be employed to obtain a spawner abundance estimate for the entire watershed.  The ability to obtain rather precise estimates of annual adult abundance should permit us to reliably assess the status of adfluvial spawners in our watersheds and track trends in this high-level indicator over time.

Photo 1

Photo 1.  Floating weir used to capture ascending spawners at river kilometer 6.0 in Lake Creek.  Photo does not depict the hoist that modified the trap design in 2009.

Table 7.  Abundance estimates and number of fish captured for adfluvial cutthroat trout spawners and outmigrating juveniles in Lake and Benewah watersheds, 2004-2010.  Captured adults were intercepted as ascending spawners and descending post-spawn outmigrants. 

Table 7

Photo 2

Photo 2.  Fixed weir used to intercept post-spawn adults and outmigrating juveniles at river kilometer 6.0 in Lake Creek.  Close-up of pop-out panel insert is depicted in the inset photo in upper-right corner.

Adfluvial Juvenile Outmigrant Abundance

Our status and trend monitoring program also tracks adfluvial juvenile production in Lake and Benewah creek watersheds.  In combination with our adult spawner estimates, juvenile outmigrant abundance estimates and associated age structure information will permit the derivation of outmigrant per spawner ratios, a watershed-wide indicator that would allow tracking of trajectories in juvenile production in addition to aiding in the assessment of in-stream population response to our restoration actions (Bradford et al. 2005).  Outmigrating juveniles are captured with the same fixed weir traps that are used to capture post-spawn adults.  The greater numbers of juveniles captured in the Lake Creek trap since 2005 and in the Benewah Creek trap since 2007, compared to earlier years in both watersheds, likely reflect our improvements to the outmigrant fixed-weir trap design that were described above (Table 7).

Because of the increased success in capturing juveniles, we began a PIT-tagging program in 2006 in Lake Creek and in 2008 in Benewah Creek to annually generate outmigrant abundance estimates.  Throughout the outmigration period, subsamples of captured juveniles (e.g., 40-80) were periodically tagged and released upstream of the trap to estimate capture efficiencies (Carlson et al. 1998).  Release trials were typically conducted every 4-6 d, with a subsample of fish from each release trial held overnight before release to evaluate tag retention and survival rates (since inception of the release trial protocol, we have not had a tag shed nor a mortality).  Generally, under amenable flow conditions, our capture efficiencies have exceeded 90% which give rise to rather precise outmigrant estimates (e.g., flow years of 2009 and 2010 in Lake Creek, Table 7).  However, under years with extended high flow periods (e.g., 2008, Table 7) capture efficiencies can be extremely low which decrease our confidence in the overall abundance estimates.  Furthermore, notwithstanding the inability to capture fish during periods of suspended trap operation during high flow events, we consistently are unable to effectively deploy traps early enough to sample the early part of the outmigration as evidenced by the large numbers of juveniles typically captured immediately upon trap installation.  Consequently, outmigrant abundance estimates are undoubtedly biased low in most years.  Given these concerns, we are considering an alternative mark-recapture protocol to address these biases that will be discussed more fully in our proposed deliverables.

Juvenile-to-Spawner Return Rates

The PIT-tagging program was also initiated to address the uncertainties that may be limiting survival rates of adfluvial cutthroat trout during lake residence.  Accordingly, full duplex PIT-tag pass-through antenna arrays have been installed in close proximity (5-10 m) and downriver of floating weirs in the mainstem of both watersheds to interrogate tagged fish and supplement information obtained from adults captured in our traps.  Given that the fixed PIT-tag antennas span the entire channel width in Lake Creek and interrogate the wetted channel in Benewah creek under most flows, the likelihood of detection would be great as upriver spawners linger in the vicinity of the detection field as they attempt to negotiate the trap.  Further, tagged juveniles released as test batches upriver of the antenna array in Lake Creek demonstrate detection rates of 95-100% (Firehammer et al. 2010).

As of 2010, 4545 and 757 juveniles have been tagged in Lake and Benewah creeks, respectively.  Interrogation data from these tagged fish suggest that a low percentage of outmigrating juveniles return to spawn as adults.  Of the 2272 juveniles that have been tagged from 2005 to 2007 in Lake Creek (cohorts for which enough years have elapsed to evaluate return rates for juveniles with variable lake residence times), only 1.7% have been uniquely detected.  Recent interrogation data from tagged Benewah creek outmigrating cohorts reveal similar results.  Although empirical estimates of in-lake survival rates for adfluvial cutthroat trout are scarce, several studies have provided values with which comparisons may be drawn.  Annual survival rates of 49% were estimated in Lake Koocanusa for cutthroat trout from reservoir entry as juveniles to first time spawning two years later which equates to around a 25% return rate (Huston et al. 1984).  Gresswell et al. (1994) estimated a 16-25% return rate for adfluvial juvenile Yellowstone cutthroat trout emigrating from Arnica Creek in the Yellowstone Lake system in the early 1950’s.  Compared with these studies, our juvenile-to-spawner return estimates are substantially lower.  We also began PIT-tagging ascending spawners (tag placement in pelvic girdle) in 2009 that were captured in our floating weirs to evaluate post-spawn survival rates and return frequency of adults.  Interrogations from the 2010 and 2011 seasons indicate that approximately 45% of the adults tagged in 2009 have already returned as repeat spawners.  Apparently, our data suggest that juvenile survival, but not post-spawn adult survival, is limiting in-lake adfluvial production in our watersheds.  Demographic modeling analyses for cutthroat trout have also found in-lake juvenile survival to be a key vital rate in determining overall population growth (Stapp and Hayward 2002).

Stream Densities of Cutthroat Trout

Our monitoring program has also conducted population surveys at established index sites distributed across tributary and mainstem reaches to evaluate cutthroat trout abundance trends at a much finer spatial scale than that attainable using our migrant trap data.  Trend trajectories permit an examination of whether conditions appear to be improving or declining at local tributary, watershed, and regional scales.  Trend monitoring also permits a description of temporal changes in spatial distributions to assess expansion rates of cutthroat trout populations to examine whether newly created suitable habitat is undergoing colonization.  In addition to our adfluvial watersheds (Benewah and Lake creeks), these surveys are also conducted in Evans creek which supports a prevailing resident cutthroat trout population and serves as a reference watershed for our monitoring program within the basin given its more suitable rearing habitat for cutthroat trout.  Our monitoring protocol entails electrofishing index sites during baseflow periods, and has employed multipass-depletion sampling procedures to obtain linear density estimates (fish / 100m).

Surveys conducted since 2004 generally reflect a spatial pattern of cutthroat trout distribution within each watershed that is consistent across years.  In Lake and Benewah creeks, cutthroat trout were primarily found in tributary rather than mainstem reaches, though distributions within tributaries varied between the two watersheds.  Whereas in Benewah Creek densities of cutthroat trout were typically similar across sites within each of the surveyed tributaries, cutthroat in Lake Creek were most often captured at uppermost tributary index sites, with estimated densities at least 4-5 times greater in upper than in lower reaches (Figure 6).  In comparison to our adfluvial watersheds, cutthroat trout in Evans Creek were spatially distributed across the watershed and typically observed at comparable densities in both mainstem and tributary index reaches during annual surveys.  These distributional data have allowed us to identify reaches in both Benewah and Lake creeks where suboptimal rearing conditions may be present and has guided prioritization efforts for implemented and propective habitat improvements in mainstem and tributary reaches.

Index site abundance data collected from 2003 to 2009 also revealed the presence of temporal trends in age one and older cutthroat trout in our monitored watersheds, though the abundance trajectories varied among the systems surveyed.  Synchronous trends in cutthroat abundance among reaches were detected in both the Evans Creek watershed and the upper Benewah Creek watershed as supported by a repeated measures analysis.  In Evans Creek, though there was evidence of a linear increase in abundance over time, a greater portion of the annual variability in abundance was explained by a cyclical trend (Table 8).  Generally, densities were found to decrease from 2003 to 2005, exhibit an increase from 2005 to 2007, and then decrease over the next two years, so that in half of the reaches densities in 2009 were not appreciably different from those in 2003 (Figure 7).  In comparison, cutthroat trout in upper Benewah Creek (i.e., upriver of the 9-mile bridge) displayed a more pronounced linear increase in tributary-wide densities over time (Table 8).  Densities from 2007 to 2009 were approximately twice that estimated from 2003 to 2006 in each of the five monitored tributaries (Figure 8).  Similar concurrent trends, however, were not apparent in tributary and mainstem reaches downriver of 9-mile bridge in the Benewah watershed (Table 8).  These results suggest that processes that influenced cutthroat trout demographics in tributaries in the upper Benewah watershed were operating similarly and contributing to an overall increase in juvenile abundance, whereas those that influenced abundance in the lower reaches may be operating independently from one another.  In contrast to Evans and Benewah creeks, a watershed-scale trend in cutthroat trout abundance in Lake Creek was not detectable over this time period, and reach trajectories did not exhibit similar patterns of change over time (Table 8).  For example, whereas densities in the Bozard tributary generally increased from 2003 to 2007, densities in the lower and upper reaches in the West Fork Lake tributary were respectively decreasing and high variable over the same time period (Figure 6).  This suggests that processes regulating juvenile cutthroat abundance may have been operating independently from one another in sampled reaches in the Lake Creek watershed.

Figure 6

Figure 6.  Depletion removal estimates (fish/100 m) of age 1 and older cutthroat trout for four reaches in the Bozard and West Fork drainages in the Lake Creek watershed, 2003-2009.

The positive trajectories in cutthroat trout abundance observed in both Evans Creek and tributaries of the upper Benewah watershed may in part be explained by a recent, regionally favorable environment where basin-wide stream conditions were conducive to spawning success and increased survival rates of early life stages.  Though the lack of a detectable similar watershed-scale trend in Lake Creek is not consistent with such an explanation, tributary densities in Lake Creek may be approaching carrying capacity with not much potential for further increase.  Concordant population abundances, indicative of regional climatic influence, have commonly been reported for small salmonid stream in other regional networks (Platts and Nelson 1988; Gowan and Fausch 1996).  On the other hand, the observed trend in cutthroat trout abundance in upper Benewah may have also been a collective response to the large-scale habitat restoration and the aggressive brook trout suppression program that have proceeded in upper Benewah reaches since 2004, given that the abundance trajectory in Benewah Creek exhibited a more linear profile than that in Evans Creek, a watershed that has received minimal management intervention in recent years.  As additional years of data are collected, further comparisons among watersheds will allow us to better evaluate whether population responses are the result of our remedial actions.

Table 8.  Summary of repeated measures analysis for series of standardized depletion estimates and first pass catch to detect trends in age one and older cutthroat trout over the years 2003-2009.

Table 8

Figure 7

Figure 7.  Depletion removal estimates (fish/100 m) of age 1 and older cutthroat trout for six reaches in the Evans Creek watershed, 2003-2009.

Figure 8

Figure 8.  Depletion removal estimates (fish/100 m) of age 1 and older cutthroat trout for five tributary reaches in the upper Benewah Creek watershed, 2003-2009.

Though multipass-depletion estimates are useful for examining site-specific temporal trends, the large degree of within-year variability among site estimates that has commonly been documented in our surveys does not permit a reliable examination of abundance when estimates are expanded to larger spatial scales (Firehammer et al. 2009).  Because of this shortcoming and the desire to increase sampling efficiency, an index of site abundance would be preferable to an absolute estimate, providing that the index tracks true abundance over time.  As such, a study was conducted in 2009 at 23 of our sites, which varied in salmonid abundance, to examine the predictive abilities of a single-pass index.  Age 1+ fish were marked and released at each site during an initial pass (marked fish ranged from 2 to 78), and the following day the site was re-sampled using our multipass-depletion removal protocol.  Depletion estimates for marked fish were generated and compared to the actual number of marked fish released, and the precision of the relationship between marked fish captured during the first removal pass and known marked fish released at each site was examined.

A strong linear relationship was detected between numbers of marked trout recaptured in the first depletion pass and those released the day before across sampled sites (r = 0.95).  Others have also found single-pass indices to perform well in predicting abundances for salmonid populations in small-streams (Jones and Stockwell 1995; Kruse et al. 1998; Bateman et al. 2005).  More importantly, we found that depletion estimates underestimated the true abundance, primarily as a result of an overestimation of capture probability during subsequent passes, which was consistent with other studies that documented biases associated with depletion-removal estimates for salmonids in small stream systems (Peterson et al. 2004; Rosenberger and Dunham 2005).  Results from our repeated measures trend analyses also indicated that first pass catch data provided similar interpretations of watershed-wide abundance trends in cutthroat trout as did our removal-depletion estimates (Table 8).  These results lend support to using first-pass catch rather than multi-pass depletion estimates to examine long-term trends in our watersheds, and consequently, since 2010 we only conduct single passes.   Moreover, because of the reduced effort associated with single-pass efforts, we intend to expand our summer surveys across a greater percentage of our watersheds to better understand salmonid demographics.

Objective 3: Evaluate Effectiveness of Habitat Restoration

Barrier Removal and In-Channel Wood Additions

Barrier removals have been implemented in several locations recently as a priority for reconnection of isolated habitats and blocked tributaries, which has been demonstrated to provide a quick biological response, is likely to last for many decades, and has a high likelihood of success (Pess el al. 2005; Roni et al. 2008).  The first of these projects, completed in 2004, was a culvert replacement at the confluence of Windfall Creek and Benewah Creek (RM 11.5) to restore fish passage for adfluvial westslope cutthroat trout to 4,344 meters of high quality spawning and rearing habitat (Contract 10885/no WE reference).  Hydraulic analysis indicated the old 122 cm diameter pipe was a barrier for all flowrates during the migration period due to excessive leap height and velocity.  The old pipe was replaced with a 221cm x 160cm pipe-arch placed below grade and lined with natural stream substrate.  Tailwater control at the outlet of the culvert was created by constructing a series of riffles in a 200 m reach of Benewah Creek downstream of the outlet.  This had the effect of reducing channel entrenchment and increasing rearing habitat capacity.  Approximately 28 m3 of large wood was placed in the treatment reach to increase roughness in overbank areas and provide instream habitat complexity.  Figure 9 shows the difference in longitudinal profile and wood frequency before and after restoration activities were completed.  The LWD volume was increased from 0.057m3/100 m to 5.59m3/100 m.  Mean residual pool depth increased from 0.41 m to 0.78 m.  Bank height ratio, the ratio of total bank height to bank full height, was reduced by 54% and estimated stream bank erosion rates and sediment yield were reduced by 47% and 69%, respectively.

 Figure 9

Figure 9.  Comparison of channel bed form and large wood frequency before and after restoration for a site in Benewah Creek.

An additional fish passage project was conducted on the North Fork Alder Creek where Tribal staff identified a stream crossing as a complete barrier in 2005 (Contract 10885/WE E175).  The existing stream crossing, which consisted of logs and fill, was replaced with a 11.5 m x 4.4 m x 3 m Horizontal Ellipse CMP culvert.  Construction for the project was completed in June -July 2006.  This project restored connectivity with the upper North Fork Alder Creek watershed and opened up 2,469 m of high quality rearing and spawning habitats upstream of the new culvert.  The new culvert allows for passage of all size classes of westslope cutthroat trout.  The crossing is more stable and less susceptible to erosion.  Flood flows can pass through the culvert instead of being blocked and forced over the road surface, effectively eliminating the road as a sediment source to the stream channel.

Several recent projects have been implemented to add coarse wood to discrete stream reaches where deficiencies in instream wood have been identified and where recruitment processes have been impaired by past management.  Large woody debris structures were added to a site in Evans Creek in October 2005 with the objectives of increasing pool habitats, accumulating spawning substrate and providing enhanced cover opportunities for fish (Contract 10885/WE H29).  This project involved placing 4 MBF of natural wood and 16 ELWDTM (Type 20 N) structures along 152 m of Evans Creek.  Approximately 44 pieces of natural wood were placed on the site, these consisted of pulp logs that came in a variety of sizes as large as 10 m long and 0.6 m in diameter.  The ELWdTM structures were formed from eight smaller diameter logs to form structures that were approximately 63-68 cm in diameter and 6 m long.  Habitat data was collected for the site from before and after wood additions.  The density of large wood increased by 256% from 4.11 m3/100 m in 2005 to 14.63 m3/100 m in 2006.  Much of the 2005 wood density was due to a single large rootwad that had a volume of 3.97 m3.  This rootwad moved off the site in 2006.  It was found that localized scour of the bed surface occurred in conjunction with placement of the ELWdTM structures during the first year following implementation.  However, any changes in pool metrics attributed to restoration were transient and we did not observe significant changes in either pool depth or frequency relative to a control site when comparing pre-treatment and post-treatment data.  Though trout densities were very similar in lower Evans creek from 1996 to 2002, extremely different trends were observed from 2003 to 2009 between the treated reach and nearby control reaches located upstream and downstream of the project (Figure 10).  Prior to restoration, from 2003 to 2005, the mean density of cutthroat trout at the treated site was 12.8 fish/100 m.  After restoration in 2005, mean density over the years 2006 to 2009 increased dramatically to 93.2 fish/100 m.  Conversely, over the same time periods, mean densities decreased from 48.3 to 32.3 fish/100 m at a downriver control site, and from 30.8 to 21.1 fish/100 m at an upriver control site.  Evidently, the ELWdTM structures provided important habitat at the treated site and pool depth, as intended to be created with the addition of the ELWdTM structures, may not be as important in creating suitable rearing habitat in Evans Creek as in our other systems.  One explanation is that water temperatures in the Evans Creek watershed are not as limiting as temperatures found in Benewah Creek.  For example, water temperatures at Evans site 3 exceeded 17° C less than 2% of the time compared to approximately 50% of the time in Benewah mainstem sites near 9-mile bridge in 2006 (Vitale et al. 2008).  Thus, the thermal refugia that have been observed in deep restored habitats in the upper Benewah watershed may not be as critical for cutthroat trout in Evans Creek.

In 2007, a instream restoration project was completed on Whitetail Creek, a tributary to Benewah Creek (Contract 33533/WE I29).  The objectives of the project were to to increase habitat complexity, increase channel stability, reduce bank erosion, and increase the frequency of overbank flooding by adding large wood to the stream channel.  A total of 305 m of stream channel was treated.  Approximately 20 MBF of wood was used to create single and multiple log structures for this project.  Portions of the logs were buried below the predicted depth of scour to act as anchors for the structures.  Other logs were placed along and across the stream in different configurations to form bank protection structures and dams.  Twenty structures were built.  Eroding stream banks were reshaped in areas where structures were placed in order to form new bankfull benches.  Prior to construction wood volumes for the project reach was 1.54 m3/ 100 m.  One year post construction saw a wood loading of 11 m3/ 100 m.

Figure 10

Figure 10.  Density estimates and associated 95% confidence intervals for cutthroat trout at restored site 3 and unrestored sites 2 and 4 in lower Evans Creek, 1996-2009.   In-channel habitat enhancement occurred at site 3 in fall 2005 after fish sampling occurred (depicted by arrow).  The accompanying photo shows juvenile cutthroat trout using ELWd™ structure as cover.

Developing Adaptive Approaches to Restoring Watershed Processes

Since 2005, much of the restoration effort for this project has been directed at recovering a suite of watershed processes based on increasing the connectivity of the channel and floodplain and restoring native plant communities for a 5.1 km reach of upper mainstem habitats in the Benewah Creek watershed, with the downstream end of the reach located 14.3 km from Coeur d’Alene Lake.  This reach was prioritized, in part, based on the measured deviation from historic and reference conditions for several habitat, water quality and landscape elements (e.g., wetland loss, channel stability, riparian conversion), and its proximity to intact habitats and source populations in the upper watershed (Vitale et al. 2002).  The implementation of this larger reach scale project is consistent with the multispecies analytical approach described by Beechie et al. (2008) in which landscape functions at the scale of species and ecosystems are prioritized for restoration based on the degree of impairment to processes and/or rarity of habitat types.

In this reach, the historical engagement of flood flows on the valley floor was most likely in response to both (i) blockage effects of large wood pieces falling into the channel and aggregating smaller wood, and (ii) beaver dams, with local gravel and fine sediment accumulations upstream.  Following removal of the valley forest, beaver trapping, and 70+ years of cattle grazing, the effective flood level control provided by flow obstructions and the associated upstream gravel accumulations was likely removed, resulting in less frequent and shorter duration inundation of the valley floor during snowmelt and runoff events compared with pre-settlement times.  In addition, impacts to the former riparian forest, which provided root cohesion, resulted in reduced stability of stream banks and a general unraveling via widespread lateral bank failures and channel avulsions throughout the course of Benewah Creek.  Hydraulic analysis of representative channel cross-sections through this degraded reach show the overall level of incision/enlargement is approximately equivalent to the capacity of a 5-year return interval peak flow event, with some areas exhibiting channel capacity that approaches the 10-year peak flow.  Implementation has proceeded with the objective of recovering a more stable channel and floodplain geometry by restoring natural fluvial geomorphic processes and riparian vegetation that allow for channel migration without incision.  During the first phase of implementation (2005-2008), the design took the approach of filling the stream channel to historical elevations and utilizing historical alignments where possible (Contract 10885/no WE reference).  In areas that laterally expanded following entrenchment, new banks and floodplain were created.  Excavation to enhance channel planform was generally not employed, except in areas where deposited sediments occluded abandoned channel segments that were reactivated.  The designed planform creates channel grade and profiles within the range of what is believed to be historical conditions, based on topographic and field analysis.  A second phase of implementation (2009-2012) takes an approach involving minimal in-channel work and a reliance on beavers and beaver assist structures to aggrade the incised stream channel over time (Contract 37842/WE E175).  Discrete segments of relict channels were reactivated where these opportunities existed, but more importantly, in-channel structures were constructed to facilitate overbank flooding in key areas to support establishment and growth of native plant communities across the valley bottom and to help reinforce a more stable complex of natural beaver dams.

A total of 2,523 m of channel was constructed between 2005-2008, and changes in response variables are summarized in Table 9 using a combination of before/after and treatment/control comparisons from monitored sites (Contract 10885/WE G30).  Restoration activities have increased channel length by 506 m, resulting in an overall 25% increase in sinuosity from 1.28 to 1.68.  Slope deceased by 58% from 0.0048 pre-construction to 0.002.  Mean residual pool depth increased significantly (p <0.001) from 0.57 m pre-construction to 1.18 m and mean low-flow thalweg depth also increased significantly from 0.38 m pre-construction to 0.52 m (p<0.0167) (Figure 11).  Pool volume increased by 41% from 155 m3/100 m to 218 m3/100 m.  Instream large wood volume increased 143% from 3.15 m3/100 m pre-construction to 7.67 m3/100 m.  For some constructed channel segments, the increase in wood frequency and volume was even greater.  Changes in stream bank erosion rates were estimated for treated and untreated control sites using the BANCS model (Rosgen 2006), which combines quantitative measures of stream bank characteristics with derived values of near-bank sheer stress to generate estimates of average annual erosion rates.  The control site was characterized by unstable stream banks with accelerated erosion rates and increased sediment yield to the channel; 30% of stream banks showed active erosion with erosion rates of 0.7 metric tons/year/m.  Restoration efforts have significantly improved stream bank conditions to reduce erosion potential (Photo 3).  Significant response variables include the bank height ratio, which was reduced by 50%, and the rooting character (e.g., root density and depth) of stream bank vegetation.  We estimate that erosion rates have been reduced by 73% with a reduction in total sediment yield of greater than 1,294.6 metric tons/yr for the 2,523 m of channel that has been treated to date.  Active bank erosion was evident at 10% of stream banks 2 years post-restoration, a reduction of 65% compared with the untreated control.  A mix of 23 native plant species, including more than 78,000 herbaceous plants and 35,000 woody trees and shrubs have been planted in 7.2 hectares of valley bottom floodplain influenced by the project (Contract 10885/WE J47, WE K47).  In these areas, the extent of wetland habitats has been increased by 48% and wetland function has been improved over a broad range of indices.  Improvements in functional capacity are most likely attributable to the increase in hydrologic interaction between the restored Benewah Creek and it’s floodplain, with the greatest improvements evident in maintaining detrital biomass, dissipation of energy, sediment and nutrient retention/removal, and dynamic and long term surface water storage.  Mean depth to groundwater during summer base flow, as measured at shallow groundwater wells (N=10) in 2008, indicate much higher water levels in restored reaches (mean = 0.62 m) compared with untreated controls (mean = 1.32 m).  Together these changes reflect a significant improvement in the quantity and quantity of instream habitats available to native fishes as well as an improvement in the geomorphic characteristics often correlated with increased biological productivity and associated with ecological restoration.

Photo 3

Photo 3. Comparison of representative stream bank and channel conditions in restored (A) and untreated (B) mainstem reaches of Benewah Creek.

 

Figure 11

Figure 11. Box plots comparing residual pool depth and low-flow thalweg depth pre-construction in 2005 and 1-year post-construction in 2006.  The horizontal lines within the boxes are median values, the upper and lower edges of boxes the central 50% of the distribution, and the whiskers the highest and lowest values, including “outliers” (asterisks).  Median values are significantly different (p < 0.0167).

Table 9. Summary of change for selected response variables following restoration in Benewah Creek.

Table 9

More recently, our monitoring of natural beaver dams in the upper 3 km reach of the Benewah Creek mainstem, beginning in fall 2008, greatly influenced our approach during the second phase of restoration (Contract 47583/WE W157).  Our surveys indicated that only 26% of the dams appeared to be built with or upon stable materials such as large wood; most of the dams were built with small alder pieces (Vitale and Firehammer 2011).  Because of the small size of dam-building materials, in combination with the entrenched nature of the reach and the lack of other large wood to attenuate current velocities, many of the dams were either compromised or destroyed during ice breakup and peak flows.  Notably, of those dams that tended to persist, most were located in areas with a proximate relatively intact riparian forest and the presence of large wood in the channel (Figure 12).  Though dams tend to be rebuilt during late summer and early fall periods, their lack of stability precludes the consistent availability of deep pool habitat for cutthroat trout during both critical overwintering and warm, mid-summer rearing periods.  Furthermore, the lack of intact structures during spring runoff does not provide the mechanism that will consistently promote the engagement of spring flows with floodplain habitats and facilitate restoration of a riparian forest.

 Figure 12

Figure 12. Mean change in dam height with associated 95% confidence intervals from the fall 2009 to the spring 2010 survey (left panel), and the mean height (± one standard deviation) of dams surveyed during the spring of 2010 (right panel).  Circle, squares, and triangles represent three discrete reaches, where reach 2 (squares) is laterally bounded by relatively intact riparian forest and exhibits relatively higher large woody debris loading.

We developed our natural analog approach for beaver assist structures based in part on the surveyed characteristics of natural dams, using an arrangement of large logs to create backwater effects and flow constriction to allow for more frequent and extensive floodplain connection during annual floods (DeVries et al. 2011 In Press).  Structures were sited at strategically selected locations to facilitate connection of key floodplain swales during high flows.  This approach was conceived as an adaptive application, where additional structures may be identified for construction based on future monitoring of the present structures.  Because we do not know the best approach a priori, we conceived two alternative types of engineered flow choke structures with different means for upstream water surface elevation control.  Both designs involved constructing log “walls” with the appropriate hydraulic constriction to back up water to the floodplain level at approximately the target bankfull flow (Photo 4).  The structures extend downwards sufficiently to account for predicted scour depths, and extend into the floodplain sufficiently to prevent the stream from accomplishing an end-run around the structure.  The sill elevation of the structures was designed to emulate general low flow control elevations formed by numerous beaver dams present in the reach, where the median depths of dams were 0.35 m at the riffle crest and 0.98 m below the floodplain.  We also conceived a non-engineered approach involving placing 2-4 large logs in the channel to provide a key building block to aid beavers in dam construction.  This was based on observations that the most persistent, existing dams throughout the Benewah Creek stream corridor are built with mountain alder keyed into remnant in-channel large wood.  MacCracken and Lebovitz (2005) found that this technique can work under specific circumstances, when the channel is unconfined with a wide floodplain, there are no logjams nearby, and there are deep pools and banks suitable for dens nearby.  The objective of this approach is to assist the beaver in constructing new dams by supplying them with foundational dam material.  Additionally, fresh black cottonwood, Aspen saplings and conifers have been placed along the stream banks and in the channel to encourage beavers to finish the dam construction.  It has been demonstrated that beaver will use saplings placed along stream banks for dam construction (Muller-Schwarze and Sun 2003).

 Photo 4

Photo 4.  Two types of flow choke structures were built, one with a combined orifice and weir (a), and the other with a simple contracted weir (b).  Both structures back water upstream during high flow and are strong enough to withstand ice jams.

Between 2009 and 2011, we built 9 flow choke structures within the active channel - 4 additional structures were built in side-channel habitats and in channels that will be activated in the future - and we used a simpler approach to reinforce natural beaver dams and/or provide beaver assist structure in 7 additional locations (Contract 42560/WE D30).  These structures influence 797 m of stream habitats at low flow through backwater effects, and provide increased connectivity to the valley bottom floodplain for about 2.1 km (70%) of the project reach.  Importantly, from a riparian floodplain restoration perspective, we have documented overbank flows across the valley bottom at discharges equal to about the 1.5 year return interval flood in reaches associated with more stable natural dam complexes and in the vicinity of our structures (Photo 5).  Other reaches require much higher discharge for overbank flow.  Recovery of beaver-generated floodplain wetlands and their wet meadow, scrub-shrub and forested plant communities depends upon restoring lost hydraulic linkages between the channel and its floodplain (Westbrook et al. 2006).  Characteristic riparian floodplain vegetation depends on annual flood-pulses and a locally high water table.  We note that the choke structures were not designed to increase summer pool habitat directly over current conditions.  In contrast, natural beaver dam building significantly increases the amount and depths of pool habitat in Benewah Creek.  We have observed, however, that most dam building activity appears to occur later in the summer, which leads us to suggest that thermal refugia and habitat cover typically associated with deeper pools and increased trout abundance (e.g., Ebersole et al. 2003; Firehammer et al. 2010) is currently less available during the warmest mid-summer periods.  The loss of unstable dams during high flows and ice breakup may also contribute to poor overwinter survival in mainstem habitats because both juvenile and adult cutthroat trout are known to use deep pools as winter refuge habitat in small stream systems (Jakober et al. 1998; Brown and Mackay 1995; Harper and Farag 2004; Lindstrom and Hubert 2004).  In instances where flow choke structures have replaced less stable natural dams, the effect has been to increase residual pool depth by an average of 0.33 m and increase pool area by 141%.  In addition to the above mentioned structures, approximately 48 cubic meters of wood (80 20-33 ft. long logs), primarily aspen and conifer logs, has been added to the stream channel and near bank region within a 700 meter reach to aid beavers in dam construction and increase wood loading to approximate a target wood loading of 6-9 m3/100 m for mainstem and tributary habitats in the watershed.  Collectively, the approaches to channel wood additions that have been implemented most recently allow for more frequent and extensive floodplain connection during annual floods, increase deep pool habitats associated with improved summer and winter rearing, and is a natural analog alternative to large scale riffle construction that maintains connectivity with cooler groundwater during summer months.

Photo 5

Photo 5. Over bank flows in discrete channel segments of upper Benewah Creek are initiated at the 1.5 year return interval flood (168 cfs) in areas that are associated with engineered structures that have been constructed in the channel, as well as with stable, persistent beaver dams, large wood aggregations and intact riparian forest.

In combination with the in-channel work described above, restoration of riparian plant communities has proceeded in floodplain habitats throughout the reach, and especially in areas where project work is resulting in more frequent overbank flows (Contract 42560/WE E47, F47).  A primary strategy being utilized for floodplain restoration is the utilization of black cottonwood’s unique life history characteristics to rapidly “flip” or change the current degraded riparian ecosystem into a diverse self-sustaining riparian forest.  Although black cottonwood’s regenerative strategy (seedling establishment on bare alluvial substrates and branch fragment vegetative propagules) likely resulted in it historically playing a non-dominant role in the riparian forest, its life history characteristics make it ideal for rapidly establishing a complex riparian forest.  The planting restoration design calls for establishing a matrix of floodplain cottonwood and other woody shrubs, interplanted with understory cedar, Engelmann spruce and pine species.  Cottonwood will establish a closed canopy within about 5 years and act as nursery cover for establishing understory conifers.  Cottonwood break-up will occur at about 60-90 years, relinquishing understory conifers to a dominant canopy position.  This technique has been used successfully with cottonwood and western red cedar in trials in British Columbia (Peterson et al. 1996).  From 2009-2011 a total of 59,053 herbaceous plants and 20,953 woody plants representing 26 species were planted to treat 9.45 hectares of floodplain habitats and 2.85 km of stream bank.  In much of these areas, invasive reed canarygrass (Phalaris arundiacea) that had become established was mechanically removed from planting areas prior to treatment.  The establishment of an interior forest micro-climate following canopy closure will provide significant enhancement of fish and wildlife habitat throughout the Benewah Creek valley riparian ecosystem.  Specifically, the new riparian forest will provide for maintenance of habitat interspersion and connectivity, reflecting the capacity of a wetland to permit aquatic organisms to enter and leave the wetland via permanent or ephemeral surface channels, overbank flow, or unconfined hyporheic grave aquifers, and access of terrestrial or aerial organisms to contiguous areas of food and cover (Jankovsky-Jones 1999).  The forest will support enhanced fish habitat through stream shading, allochthonous input of fine, coarse and organic carbon to the aquatic ecosystem, and input of large wood to the stream channel.

Another major stream and wetland restoration project was recently completed on the WF Lake Creek between 2009-2011 (Contract 37842/WE F175).  The project treated 762 m of WF Lake Creek and 305 m of an unnamed tributary.  The project reach was an incised section of stream channel that had been straightened and ditched prior to 1937.  The stream reach had severe bank erosion, lack of large woody debris, low riparian plant diversity, and a confined floodplain (Photo 6).  Flood flows were concentrated in the channel, located 4-6 ft. below the valley bottom, and rarely able to access the historic floodplain.  The restoration approach involved filling 610 m of the existing incised channel and diverting flows into a newly constructed 922 m long channel that is well connected with the valley bottom to allow dissipation of flood flows over a broad, vegetated floodplain.  New stream habitat was constructed over the channel subgrade using imported gravels and logs to create streambed and streambanks (Photo 6).  Rock was placed in the channel in combination with large wood to form riffles and pools.  The seasonal stream was also filled to repair the degradation that had occurred as headcuts from the incised mainstem migrated headward over a period of several decades.  Goals for this project included: 1) create wetland habitats and increase hydraulic connections with the valley bottom; 2) reduce bank erosion; 3) provide a long-term source of large woody debris for natural recruitment; and 4) provide measurable increase in abundance and distribution of westslope cutthroat trout.

Photo 6

Photo 6.  WF Lake Creek before (2008) and after (2011) restoration treatments were applied to address severe channel incision and bank erosion stemming from historical channelization of the stream.

A comparison of response variables for pre/post construction is summarized in Table 10 for the site.  Restoration activities have increased channel length by 312 m, resulting in an overall 51% increase in sinuosity from 1.13 to 1.71.  Slope decreased by 19% from 0.0047 pre-construction to 0.0038.  Restoration efforts have significantly improved stream bank conditions to reduce erosion potential.  Bank height ratio (the ratio of total bank height to bankfull height) was reduced by 75% from 4.37 to 1.  A mix of 23 native plant species, including more than 20,199 herbaceous plants and 11,566 woody trees and shrubs have been planted in 3.64 hectares of newly created floodplain, increasing the plant diversity on site (Contract 42560/WE H30, I47).  The extent of wetland habitats has been increased by 302%.  Together these changes reflect a significant improvement in stream and riparian processes that should translate into improved quantity and quantity of in-stream habitats available to native fishes.

Table 10. Summary of change for selected response variables following restoration in WF Lake Creek.

Table 10

Thermal Response to Restoration in Benewah Creek

Temperature monitoring in mainstem reaches of the upper Benewah watershed have revealed the creation of thermal refugia that were the result of our large-scale channel restoration activities.  Sequences of temperatures, collected in riffles and in the deepest part of adjacent upstream pools, have been measured continuously along mainstem reaches during mid-summer periods before and after their restoration.  Before restoration, most pools in upper Benewah mainstem reaches were less than 1.0 m deep and generally were not more than 0.5°C cooler than their associated downstream riffles (Figure 13).  However, in the reach of the mainstem that underwent channel reconstruction in 2005 and 2006, post-reconstruction pools were typically greater than 1 m, and stream temperatures measured along the bottom of these pools were frequently between 2 and 5°C cooler than ambient riffle temperatures.  Pools in the 2007 restoration reach were also generally deeper after than before channel construction, with temperature differences ranging between 2.5 and 6.5°C during the post-restoration survey.  In summary, cool-water refugia were more prevalent in reaches after than before large-scale channel restoration, apparently created by the concomitant deepening and lengthening of pool habitats during the process of streambed elevation within the designated riffles.  The creation of these refugia should increase the availability of suitable rearing habitat for WCT in mainstem habitats of the Benewah watershed (Torgersen et al. 1999; Ebersole et al. 2001, 2003).

Figure 13

Figure 13.  The relationship between temperature difference and residual pool depths for surveys conducted above 9-mile bridge in the upper mainstem of Benewah Creek along reaches that were restored in 2005 and 2006 (top panel) and in 2007 (lower panel).  Temperature difference was calculated as the temperature measured along the pool bottom minus the temperature measured in the associated downstream riffle.  Years in which surveys were conducted are identified in parentheses.

Biological Response to Mainstem Habitat Restoration in Benewah Creek

Despite the mosaic of thermal refugia and the complex habitat (e.g., deep pools and LWD additions) that have been created in reaches of the upper Benewah mainstem that had been restored from 2005 to 2008, we have yet to see direct evidence of a significant response by cutthroat trout.  Various explanations have been proffered for the apparent lack of utilization of these restored habitats, which have been described in detail in previous annual reports (Firehammer et al. 2009, 2010).  Briefly, these include, but are not limited to, the following: (1) a sufficient degree of isolation between core rearing tributaries and restored mainstem habitats, mediated by distance or other physic-chemical barriers (e.g., temperature), that inhibit dispersal (Bond and Lake 2003; Pretty et al. 2003); (2) insufficient tributary densities to induce density-dependent emigration into these habitats (Johnson et al. 2005; Shrank and Rahel 2006); (3) a lag in positive fish response because of the repeated, acute artificial disturbances imposed by channel reconstruction on ecological and hydrological stream properties over the four years of restoration; and (4) the persistence of limiting factors in reaches adjacent to those restored (Moerke and Lamberti 2003; Cowx and Van Zyll de Jong 2004).  We realize that because we are not only amending local deficiencies in habitat complexity but also addressing impaired processes that operate at larger spatial scales, the re-establishment of natural processes will occur gradually, and as such, detection of positive responses by cutthroat trout may require a longer timeframe.  As we progressively address contiguous reaches in the upper Benewah mainstem with Phase 2 implementation, we expect to continue to increase the extent of favorable rearing habitats that are conducive for cutthroat trout colonization and growth.

Another explanation for the absence of cutthroat trout in restored habitats, which has not been adequately tested, is our inability to capture fish using our current sampling techniques.  Given the thermal refugia that have been observed at the bottom of deep pools in restored reaches, cutthroat trout, if present, would most likely be using these micro-habitats.  However, restored pools are frequently over 4 ft deep, and not only is visibility poor but both wading and netting prove challenging at these depths.  Furthermore, because of the low conductivities in our watersheds, the electrical fields generated by our backpack electrofishing equipment are exceptionally small and consequently may not elicit electrotaxis in fish lying along the bottom.  Currently, we are experimenting with other gear types (e.g., fyke nets) to evaluate whether cutthroat trout are using deep restored pools as summer rearing habitats.

Though a direct numerical response to restoration has not been observed in mainstem reaches, the significant increase in cutthroat trout densities in tributary habitats demonstrated by our trend analysis may suggest an indirect response to restoration.  Deepened mainstem reaches may have provided suitable overwintering habitat that was available only in a limited capacity before restoration.  Both juvenile and adult cutthroat trout have been found to prefer deep pools as winter refuge habitat in small stream systems (Jakober et al. 1998; Brown and Mackay 1995; Harper and Farag 2004; Lindstrom and Hubert 2004).  In addition, cutthroat trout have been found to respond positively to improvements to winter refuge habitat.  Solazzi et al. (2000) found cutthroat trout abundance to increase, presumably owing to higher overwinter survival rates, following the creation of winter habitat for salmonids in coastal Oregon streams.  In addition, Roni and Quinn (2001) found higher densities of cutthroat trout at sites with experimental large woody debris additions than at control sites, but only during winter and not summer sampling.  Evaluating the winter distribution of cutthroat trout in upper Benewah mainstem habitats may reveal benefits of our channel construction activities that were not realized from summer surveys.  In order to perform such an evaluation, cutthroat trout captured in tributaries during summer and fall electrofishing surveys will be PIT-tagged and their movements monitored throughout the fall and winter using strategic placement of antenna arrays in mainstem habitats.  A more detailed description of this methodology is provided in the proposed deliverables section.

Objective 4: Address Impacts from Non-native Introduced Fishes

Non-native interactions in stream environments

A brook trout control program was initiated in 2004 to suppress the numbers of brook trout found in main-channel and tributary habitats in the upper portion of the Benewah watershed.  However, unlike other brook trout removal projects that have focused on eradication and subsequent preventative recolonization measures, such as passage barriers (Shepard et al. 2003), our approach was tempered by the desire to maintain connectivity with the lake to promote the migratory life-history variant of our cutthroat trout population and its concomitant high productivity potential.  We felt that the benefits of unimpeded access and the expression of the cutthroat adfluvial life-history greatly outweighed the benefits of brook trout eradication in isolated tributaries (Peterson et al. 2008a).  Further, eradication and subsequent barrier installation have not always proven entirely successful (Thompson and Rahel 1998), and, within our watershed, would require large-scale chemical treatments and an extensive trapping and hauling program to supply migratory adult cutthroat trout to the various isolated spawning tributaries.  Our control strategy entailed annually removing fish before fall spawning periods by conducting single-pass electrofishing efforts through contiguous mainstem reaches upriver of 9-mile bridge and in tributaries that supported relatively high densities of brook trout.  Numerical responses in brook trout to our efforts were examined at a 2.0 km main-stem index reach that has been consistently targeted in each year, and at our tributary index sites in the upper watershed.

From 2004 to 2011, approximately 8000 brook trout have been removed from the upper reaches of the Benewah watershed.  Over the first three years of the suppression effort, numbers of fish removed increased from 601 to 2405, in large part due to the progressive targeting of additional mainstem river kilometers rather than just tributary reaches (Figure 14).  Not only were higher densities of fish found in mainstem reaches (most notably from the 12-mile bridge to the confluence of the upper Benewah forks) than in tributaries, but fish were also generally greater in length (Vitale et al. 2008, 2009).  The increase in the percent of mature adults removed from 26% in 2004 to 55% in 2006 also reflects the spatial re-distribution of our suppression efforts.  Since 2006, numbers of brook trout removed from the upper watershed have steadily declined (Figure 14).  Although the decline may partly be explained by the large numbers of fish removed during the early years, the low numbers of fish removed since 2009 were largely due to reduced efforts applied to mainstem reaches.  Notwithstanding the reduced effort in recent years, both numbers of brook trout and CPUE (fish removed / seconds of shock effort) have steadily declined in the 2.0 km mainstem index upriver of 12-mile bridge (Figure 14).  A significant overall reduction in brook trout densities across upper Benewah tributaries, however, has not been able to be detected.  The lack of a measurable reduction across tributaries is likely explained by the differences in trends observed among the monitored tributaries.  Whereas densities generally remained at low levels in Whitetail Creek and the South Fork since 2004, they declined substantially in the West Fork, but displayed increasing and variable trends in Schoolhouse and Windfall creeks (Figure 15).

The differences in trends observed across tributaries may be attributed to one or more of several factors including the proximity to colonizing sources, changes in reach accessibility, and varying degrees of effort applied in previous removal activities.  First, the location of Schoolhouse and Windfall creeks in the upper part of the watershed may in part explain the positive trends observed in both tributaries.  The mouths of both creeks are located along the mainstem reach where densities estimated during removal efforts have consistently been found to be the highest, thus increasing the probability for mobile individuals to colonize these tributary reaches.  Others have noted the importance of both proximity and connectivity to source localities in determining probabilities of brook trout establishment (Benjamin et al. 2007).  Brook trout expansion into Windfall Creek, however, was likely inhibited until 2004 when culvert replacement virtually eliminated this barrier.  Thus, local sub-populations, colonized by the more mobile individuals, may not have yet had the opportunity to become firmly established in Windfall Creek (Peterson and Fausch 2003), which may partly explain the variable densities observed in this tributary over the last four years.  As a result of the recent re-connectedness of Windfall Creek with the mainstem, this tributary should continue to be monitored in the future to assess rates of brook trout expansion into this newly accessible habitat.  Additionally, the differences observed among tributaries may have been due to the focus of removal efforts during the first couple of years.  Initially, before it was discovered that many of the larger adults were residing in upper mainstem habitats, efforts were concentrated in tributaries, most notably the South and West Forks.  Given that the most marked decrease in abundance was demonstrated in the West Fork, the unequal distribution of past sampling efforts may partly explain the results from our survey data.

Figure 14

Figure 14.  Number of brook trout removed from the upper Benewah watershed and from an index mainstem reach in upper Benewah in addition to the CPUE (fish removed / shock sec) of brook trout in the index reach, 2004-2011.

Figure 15

Figure 15. Depletion-removal estimates (fish/100 m) of age one and older brook trout for five tributary reaches in the upper Benewah Creek watershed, 2003-2009.

Though a tributary-wide appreciable decline was not detected in upper Benewah, a comparison with the neighboring Alder Creek watershed suggest that our suppression program has been effective at regulating numbers of brook trout at a manageable level.  Overall trends in the upper Benewah watershed have yet to display trajectories that would project densities similar to those observed in Alder Creek (Figure 16).  In most reaches, present densities are more than five times lower in the upper Benewah than in upper Alder.  Watershed comparisons also may provide insight into the productive potential for brook trout in the Benewah watershed.  Even before commencement of the suppression program, densities of brook trout in Alder Creek have been consistently higher than those documented in Benewah Creek.  In addition, whereas distributions of cutthroat and brook trout are almost entirely disjunct in Alder Creek, suggesting probable displacement by the latter (Dunham et al. 2002), distributions of both species overlap in Benewah Creek.  Differences between these two watersheds could be explained by an invasion process that is still in its incipient stage in Benewah, though given the proximity of these watersheds to each other, expansions should have proceeded at similar rates if colonizing migrants arrived from common downriver sources (Peterson and Fausch 2003).  As another possible explanation, the productive adfluvial life-history strategy that is prevalent in the Benewah but not the Alder watershed may confer an advantage to cutthroat trout in the former that permits a greater biotic resistance to invasion (Griffith 1988).  Differences in apparent vulnerabilities of proximate systems have also been reported by others that have examined brook trout invasions in the west (Adams et al. 2002; Dunham et al. 2002; Shepard 2004; Benjamin et al. 2007).

Figure 16

Figure 16. Depletion-removal estimates (fish/100 m) of age one and older brook trout for five reaches in the upper Alder Creek watershed, 2003-2009.

Alternatively, habitat conditions that are more conducive to brook trout establishment may be more prevalent in Alder than in Benewah.  For example, the spatial distribution of brook trout and their habitat preferences have commonly been associated with low gradient reaches with deep, low velocity habitats (e.g., beaver ponds) that serve both as summer rearing and overwintering habitat (Chisholm et al. 1987; Cunjak 1996; Lindstrom and Hubert 2004; Benjamin et al 2007).  Recent habitat surveys conducted across our watersheds have indicated that pool habitat is approximately three times as great in Alder Creek than in Benewah Creek (Miller et al. 2008).  Additionally, the surveys found that 33% of the pool habitat documented in Alder Creek was formed by dams, whereas only 3% of the pool habitat in Benewah Creek was dammed.  Given our current restoration approach to encourage the stability of beaver dam complexes and augment associated pool habitat in the upper Benewah watershed, we may also be increasing suitable habitat for brook trout.  Continued monitoring of brook trout numbers in the upper watershed should inform whether such unintended responses are occurring.

Our suppression program also entailed monitoring changes in maturation metrics in brook trout to detect potential compensatory reproductive responses to our removal efforts owing to a release from conspecific competition.  Specifically, we were interested in whether residual brook trout expressed changes in the average size at maturation or in the fecundity-at-length relationship.  From 2004 to 2008, a subsample of fish was dissected to ascertain maturation status, gonad weight, and, in the case of females, fecundity.  Similar data were collected from a representative sample of sacrificed brook trout from Alder Creek to obtain comparative life-history data for control purposes.  Thus far, our removal program apparently has not induced compensatory responses in the brook trout population.  Female brook trout were not more likely to mature at a given length in 2008 than in 2004 (logistic regression, odds-ratio = 1.403, p = 0.511).  Though we did detect an increase in fecundity from 2004 to 2008 for brook trout from the upper Benewah watershed, fecundities for Alder Creek females were also comparably higher in 2008 than 2004, suggesting similar mechanisms may have been operating in both watersheds (ANCOVA; Watershed, p = 0.684; Year, p < 0.001).  Though continued monitoring would better inform the potential for long-term compensatory responses, it appears that the maintenance of low brook trout densities in the upper Benewah watershed through periodic removals should not increase individual reproductive investment (e.g., increased fecundity at a given length) nor induce an earlier maturation schedule (inferred from length at maturation) that would shorten generation times.  More importantly, our results illustrate the advantage of using a control watershed when evaluating the effectiveness or potential undesired impacts of a non-native removal program.

 Figure 17

Figure 17.  Cumulative distributions of total length (mm) of brook trout removed from the 2.0 km mainstem reach upstream of 12-mile bridge in the Benewah watershed in 2005 and 2009-2011.

Non-native Interactions in Lake Coeur d'Alene

As a result of the PIT-tag information, a cooperative study is currently being conducted through the Fisheries and Wildlife Resources Department at the University of Idaho to evaluate the impact of two non-native piscivores, northern pike and smallmouth bass, on cutthroat trout survival in Lake Coeur d’Alene.  Cutthroat trout have been found to be a major dietary item for northern pike in earlier studies conducted on Lake Coeur d’Alene (Rich 1992), and smallmouth bass, a documented salmonid predator, have apparently increased in numbers in the last 10 years (Maiolie et al. 2010).  The study will incorporate two field seasons (2012 and 2013) in which both Windy Bay and the southern end of the lake, into which Lake and Benewah creeks respectively enter, will be intensively sampled during spring periods where there exists a high potential for spatial and temporal overlap of migratory cutthroat trout and both predators.  Demographic (e.g., age structure, growth, seasonal abundance) and dietary data will be collected from both predators during these repeated sampling efforts and incorporated into bioenergetic models to estimate the consumption of cutthroat trout by both species.  Information gained from this study will support the development of alternative actions that may be considered for implementation to manage the fish assemblage in Lake Coeur d’Alene, or re-direct questions and uncertainties research to other potential limiting processes in the lake (Figure 18).

Predation decision tree

Figure 18.  Diagram depicting alternative management actions that could be considered for implementation contingent on the findings of the study assessing the consumptive impact of northern pike and smallmouth bass on cutthroat trout during lake residence.  The weight of the arrows linking study outcomes to proposed alternatives denotes the relative projected feasibility of alternative in achieving success.  Two-way arrows linking proposed alternative to effectiveness monitoring denotes that monitoring will inform the implementation of alternatives under an adaptive management context.

Objective 5: Increase Coordination and Participation Among Stakeholders

Outreach and education activities are regularly completed in conjunction with restoration and monitoring efforts to effectively connect many thousands of people that are affected directly and indirectly to project work each year (Contract 37842/WE AA99).  There are two education/outreach objectives:  1) improve awareness of Fisheries Program activities within the Reservation community to solicit support and participation in projects; and 2) provide for educational opportunities that raise awareness for natural resources issues in the local schools and communities of northern Idaho (Table 11).

Outreach activities have focused on informing the public about different projects and topics important to project work.  The Fisheries Program publishes a newsletter, The Watershed Wrap, which is distributed to reservation landowners and local agencies throughout the year.  This newsletter contains a variety of articles describing work being completed by the Fisheries and Wildlife programs, as well as other natural resource management efforts conducted by the Coeur d’Alene Tribe.  Watershed and inter-agency work group meetings are also held to inform stakeholders about different projects and provide a forum to receive public input and solicit participation in future projects.  Other outreach events that are held to engage the public include hosting a periodic speaker series and annual fishing derbies.  A variety of educational activities have been completed to engage local students.  The program holds two major educational events each year that collectively have more than 500 participants:  Water Awareness Week and Water Potato Day Celebration.  Local students participate in learning stations that focus on fish, water quality, plants, soil, wildlife, macroinvertebrates, and Tribal culture.  In addition to these events, the Fisheries Program hosts summer internships for local high school students and supports undergraduate/graduate research opportunities.  Currently the program is employing two seasonal technicians as they pursue their college education.

Involvement with the public is instrumental to the success of restoration work being completed by the Fisheries Program.  The Tribe currently owns only 7.9% of the land area within the four target watersheds.  To gain access to areas not managed by the Tribe, the program works with individual landowners and local government agencies on a regular basis. Landowner agreements or memorandums of agreements are developed between the Tribe and various landowners in order for restoration work to be completed.  In order to educate the public about current and future work, landowners are contacted through letters, workgroup meetings, and personal visits.  For two major watershed assessments completed in 2007 and 2008, landowner participation was required in order to access research locations to collect important data.  For the Wood Recruitment Study, letters were mailed to all landowners in the study area describing project objectives and soliciting participation.  Owners with controlling interest in more than 60% of the study area actively participated in the study.  Two landowner meetings were held; first to describe project methods and coordinate logistics to facilitate field work, and secondly to share project results and discuss next steps.  Similarly, for the road and fish passage study, letters describing the study were sent to 190 different landowners.  Seventy seven percent of the ownership in the study area agreed to participate, including six major timber companies and five government agencies along with many small private landowners.  Two landowner meetings were held to discuss study objectives, methods, and access issues.  By engaging the public in the planning process, we ensure the success of our work.

Table 11.  Summary of education and outreach activities.

 Table 11



The table content is updated frequently and thus contains more recent information than what was in the original proposal reviewed by ISRP and Council.

Review: 2020 Resident Fish and Sturgeon Project Review

Council Recommendation

Assessment Number: 1990-044-00-NPCC-20210317
Project: 1990-044-00 - Coeur D'Alene Reservation Fisheries Habitat
Review: 2020 Resident Fish and Sturgeon Project Review
Approved Date: 10/27/2020
Recommendation: Implement
Comments: Supported as reviewed. Bonneville and Manager review ISRP comments and implement to the extent possible.

[Background: See https:/www.nwcouncil.org/fw/reviews/2019RFS]

Independent Scientific Review Panel Assessment

Assessment Number: 1990-044-00-ISRP-20210319
Project: 1990-044-00 - Coeur D'Alene Reservation Fisheries Habitat
Review: 2020 Resident Fish and Sturgeon Project Review
Completed Date: None
Documentation Links:
Review: Resident Fish, Regional Coordination, and Data Management Category Review

Council Recommendation

Assessment Number: 1990-044-00-NPCC-20120313
Project: 1990-044-00 - Coeur D'Alene Reservation Fisheries Habitat
Review: Resident Fish, Regional Coordination, and Data Management Category Review
Proposal: RESCAT-1990-044-00
Proposal State: Pending BPA Response
Approved Date: 2/26/2014
Recommendation: Implement with Conditions
Comments: Supplemental Council recommendation (to Council Decision July, 2011):
This work should accommodate all PIT Tag data generated in the Columbia River Basin, both long term and short term monitoring data, especially those data funded by Bonneville through the program. This includes tributary PIT-Tag based monitoring data currently stored in other databases such as ISEMP’s STEM database, and resident fish PIT Tag data. Furthermore, if the PERC moves forward, it would be expected that the council recommendations based on the guidance from this committee would be incorporated in this work.

Independent Scientific Review Panel Assessment

Assessment Number: 1990-044-00-ISRP-20120215
Project: 1990-044-00 - Coeur D'Alene Reservation Fisheries Habitat
Review: Resident Fish, Regional Coordination, and Data Management Category Review
Proposal Number: RESCAT-1990-044-00
Completed Date: 4/13/2012
Final Round ISRP Date: 4/3/2012
Final Round ISRP Rating: Meets Scientific Review Criteria
Final Round ISRP Comment:
First Round ISRP Date: 2/8/2012
First Round ISRP Rating: Meets Scientific Review Criteria
First Round ISRP Comment:

This proposal is truly transformational from previous work by the Coeur d’Alene Tribe. They are taking the approach that subbasin planning envisioned. This is good solid work that needs to be published; some of the principal investigators have a record of this. The CDA Fisheries project is a model for an approach for the problem. Additional sampling work may allow investigators to find out some important aspects of native trout life histories. Some telemetry work will be informative. The ISRP compliments Angelo Vitale and John Firehammer for the clear presentations and for their efforts to combine wildlife and fisheries activities, in Benewah Creek as well as in the Hangman watershed.

Overall, this proposal represents excellent planning, analysis, synthesis, and progress toward the goal of restoring adfluvial westslope cutthroat trout to CDA Lake and its tributaries. The factors affecting these fish are many, ranging from large-scale landscape-level habitat processes to non-native species invasions. The investigators have done a very good job of studying each of these, or developing plans to do so, and integrating and prioritizing restoration actions to optimize management. Likewise, the outreach and education activities planned are helping local landowners understand and support the projects.

Several aspects of the analysis of cutthroat trout survival and production might be improved by using state-of-the-art methods and software (Program MARK), if these are not already planned. Likewise, further consideration of brook trout invasions at a riverscape scale could yield important insights in their control.

The proposal was very long (61 pages), which detracted from the review; however, many of the project findings were summarized in the proposal which is good. A number of appropriate metrics are being collected along with the habitat restoration effort, for example, adfluvial juveniles per spawner and juvenile-to-spawner survival rates. The ultimate success of the program for adfluvial trout may hinge on the ability to identify and control factors limiting survival from the juvenile-to-adult stage, such as predation by non-native fishes. The overall annual cost of the project is high relative to the eventual native fish population size, but the project is diverse with many activities and areas of focus. 

1. Purpose: Significance to Regional Programs, Technical Background, and Objectives

This is an ongoing project designed to address the highest priority objective in the Coeur d’Alene Subbasin: to protect and restore remaining stocks of native resident westslope cutthroat trout (Oncorhynchus clarki lewisi) to ensure their continued existence in the basin and provide harvestable surpluses of naturally reproducing adfluvial adult fish in Lake Coeur d’Alene and in Lake and Benewah creeks, with stable or increasing population trends for resident life history types in Evans and Alder creeks.

This is a well-designed and well-presented proposal that systematically documents linkages to regional planning documents such as the Coeur d’Alene Subbasin Plan, past ISAB and ISRP reviews and guiding documents, and to regional strategies for recovering tributary habitats. The investigators provide excellent and detailed information about how their project relates to the Fish and Wildlife Program, and seven other programs in the Columbia River Basin. The work is clearly well integrated with current plans.

Technical background in the proposal is thorough and systematic, leading logically to the proposed and ongoing objectives and actions. The proposal clearly states that the main goal is to increase production and survival of adfluvial and resident westslope cutthroat trout (WCT) to make up for lost production of anadromous salmonids. The technical background needed to understand the myriad factors that affect these WCT is almost always very well detailed. Some earlier proposals focused on using artificial production to increase westslope cutthroat trout in Benewah Creek and in Lake Coeur d’Alene without adequately considering and attempting to address limiting factors. In contrast, this proposal describes known and potential factors that appear to be inhibiting cutthroat trout production. These include sediment input from past land use practices along Benewah Creek, lack of coarse woody debris, barriers to fish movement and migrations, and competition with non-native brook trout.

Strategies, objectives, and actions flow logically from this discussion and analysis. The five stated main objectives appear sound, clear, and measurable, though several will be very challenging to accomplish because of the spatial scale over which WCT complete their life cycle in this stream-lake ecosystem. Objectives include improving stream habitat, reconnecting old floodplain meadow sections, evaluation of habitat restoration actions, and reduce brook trout abundance and densities. Objectives seem well matched to the discussion of limiting factors in the proposal. The project objectives are tiered to the Intermountain Province Objectives 2A1-2A4 and to the Columbia River Basin Goal 2A that addresses resident fish substitution for anadromous fish losses (Intermountain Province Subbasin Plan 2004). Project objectives are: 1) improve stream habitats; 2) track trends in salmonid demographics and population structure; 3) evaluate effectiveness of habitat restoration; 4) address impacts from non-native introduced fishes; and 5) increase cooperation and coordination among stakeholders.

Several emerging limiting factors, such as predation by non-native fishes, are objectives of the proposal. Other project objectives, such as increasing habitat complexity and connectivity, are well integrated to help ameliorate the impending changes in climate variability. No formal modeling was done, however, and would likely be premature.

The proposal also includes objectives for understanding the lacustrine portion of the adfluvial westslope cutthroat trout life history and the impact that non-native northern pike may be having on the survival of WSCT, particularly during their first year outmigration into the shallow southern littoral zone of Lake CDA where northern pike are abundant. This portion of the proposal seems the least well developed at this time; however, the approach and proposed actions are again, logical and deserving of investigation.

2. History: Accomplishments, Results, and Adaptive Management (ISRP Review of Results)

History: The CDA approach to management of Benewah Creek and its cutthroat trout has evolved over time and now appears to be solidly grounded in modern ecological and restoration science. A fundamental goal of the Coeur d’Alene Tribe Fisheries Program is to identify restoration and enhancement needs and opportunities in areas that have the greatest potential to improve habitat and translate into positive biological responses to recover depressed native cutthroat trout populations.

The approach attempts to translate watershed analyses, resource inventories and assessments and monitoring results into the management actions needed to achieve project goals. The recent project history reflects a shift from opportunistic implementation of restoration projects to a more systematic approach for prioritizing management actions consistent with the refugia approach described by Reeves et al (1995) and Frissell and Bayles (1996) and a multispecies, analytical approach (Beechie and Bolton 1999). The approach attempts to protect the best first and expand restoration outward from areas of relatively intact habitats and populations. The multispecies analytical approach has been implemented as more detailed knowledge of factors limiting recovery have been developed. Actions focus on suites of landscape processes considered necessary to conserve multiple species.

Accomplishments: The ISRP was impressed by the careful formal planning and prioritization of restoration developed in this proposal. The investigators take a highly integrated approach to understand the historical habitat conditions, and ecosystem disturbances and processes that create and sustain habitat for WCT in this basin. They integrate knowledge of ecohydrology and channel-floodplain-riparian vegetation linkages in their work, which is uncommon. From this, they develop goals for instream habitat restoration that are in line with these natural processes, such as encouraging "ecosystem engineering" by beavers to create suitable habitat for WCT. All of this is a result of accomplishments in past data collection, analysis, and further research and synthesis based on these results, which appears to have been very well done, overall.

Second, it appears that the investigators have fairly recently realized that they will need a comprehensive mark-recapture program using PIT tags to develop robust estimates of production and survival of WCT by life stage, in order to understand which suite of factors are limiting their numbers and vital rates, and where in the river-lake system these bottlenecks occur. As such, we wondered whether employing a sophisticated tool like Program MARK would be most useful (see website of Dr. Gary White, Colorado State University), which can be used to estimate capture probabilities, abundance, survival, movement, and parameters like temporary emigration of fish using state-of-the-art analysis and testing methods.

Third, we were impressed with the approach the investigators are using to consider effects of non-native species at riverscape and lakescape scales. Clearly, like WCT, brook trout in streams also will use habitat in a spatially dynamic way, as will northern pike and smallmouth bass in CDA Lake. Understanding these dynamics may allow intercepting the non-native fish using traps or other gear at key locations where they spawn, or past which they move, leading to more cost-effective control methods in this situation where complete removal is likely impossible.

Results: This section features a nicely described logical sequence from restoration objectives (Table 1), moving through prioritizations (Table 2), into watershed functions and processes, which are tied to specific assessment techniques and procedures (Table 3). Tables 4 and 5 work through site-specific restoration actions and priorities. This is a very nice and defensible approach. For example, since 2004, 6.8 km of habitats have been made accessible through removal of passage barriers, 457 m of stream habitats have been treated with additions of coarse wood, and 6.2 km of degraded mainstem and tributary habitats and 20.3 hectares of associated floodplain have been treated through large-scale channel restoration. Although we have yet to see direct evidence of a significant response by cutthroat trout, we observed more pronounced positive trajectories in abundance in tributaries of Benewah Creek compared to the watersheds that have received less management intervention in recent years.

Investigators are working to understand the entire life history of adfluvial westslope cutthroat trout in Benewah and Lake creeks. Given that recent PIT-tag data suggest that adfluvial juvenile-to-spawner return rates are exceptionally low in their monitored systems, they are placing a stronger emphasis on understanding the processes and mechanisms that are impacting the suitability of rearing habitats in Lake Coeur d’Alene. As an initial step toward this management goal, a collaborative study with the University of Idaho is currently underway to better understand whether predation by northern pike and smallmouth bass is a predominant mechanism regulating juvenile in-lake survival rates.

It would be good to know what percentage of available degraded versus adequate habitat has been addressed by these activities since 2004, as a means to evaluate how far the effort has progressed. The collection of recruits per spawner (R/S) data and the change in objectives based on the low survival of juvenile to adult stage is good. The proposal has embraced the ISAB recommendation to use an Intensive Watershed Management approach, which involves use of treatment control sites to better identify factors affecting the resident fish.

Adaptive Management: This project is well conceived and appears well executed. It is rich in data slides and tables, which demonstrate results from the last 7 years that feed directly into the adaptive management section. The changes made in light of new information were clearly described, including 1) developing a new understanding about how stream-riparian habitat is formed and inundated during floods, 2) adjusting removal strategies for non-native brook trout to account for their patchy distribution and vulnerability in spawning habitat, and 3) developing a new study to address potential for non-native fishes in Lake CDA to be an important limiting factor. The proposal and study are grounded in fisheries, conservation, and stream restoration literature and emphasizes data collection through monitoring in order to evaluate progress and modify, if needed, project goals and actions. This is the essence of adaptive management.

Response to past ISRP and Council comments and recommendations: The authors have apparently responded to a main comment about the potential for non-native fishes in CDA Lake to reduce WCT survival. The goal of testing these effects, in part through a graduate student project, and the actions proposed based on these findings including developing new hypotheses, were clearly laid out and logical. The authors have also paid close attention to ISRP and ISAB studies and recommendations about habitat restoration, landscape and watershed scale activities, and the role of monitoring in adaptive management as evidenced by the proposal itself. 

ISRP Retrospective Evaluation of Results

The CDA approach to management of Benewah Creek and its cutthroat trout has evolved over time and now appears to be solidly grounded in modern ecological and restoration science. The CDA Fisheries Habitat Project has considerable monitoring, evaluation and reporting associated with it. Results show progress toward overall project goals. The system in place also sets the stage well for the use of adaptive management. A fundamental goal of the Coeur d’Alene Tribe Fisheries Program is to identify restoration and enhancement needs and opportunities in areas that have the greatest potential to improve habitat and translate into positive biological responses to recover depressed native cutthroat trout populations.

The approach attempts to translate watershed analyses, resource inventories and assessments and monitoring results into the management actions needed to achieve project goals. The recent project history reflects a shift from opportunistic implementation of restoration projects to a more systematic approach for prioritizing management actions consistent with a refugia approach and a multispecies, analytical approach. The approach first protects the best then expands restoration outward into other habitats and populations. Actions are focused on suites of landscape processes considered necessary to conserve multiple species.

The project shows evidence of careful formal planning and prioritization of restoration activities using an integrated approach to understand the historical habitat conditions, and ecosystem disturbances and processes that create and sustain habitat for WCT in this basin. All of this is a result of accomplishments in past data collection, analysis, and further research and synthesis based on these results, which appears to have been very well done, overall.

3. Project Relationships, Emerging Limiting Factors, and Tailored Questions for Type of Work (hatchery, RME, tagging)

Very well done, as described above. The Additional Relationships described in the proposal show that this project is well integrated into other mitigation and watershed projects, leading to synergistic and "value added" effects of coordination among projects. With respect to limiting factors, the sponsors recognize the importance of the low survival of the adfluvial juvenile to adult stage and are attempting to identify factors such as predation in the lake. Predation may constrain population increase.

4. Deliverables, Work Elements, Metrics, and Methods

Deliverable Description: The deliverables were clearly laid out, overall. Those most clear were for 1) Habitat restoration, 3A&B) Responses to habitat restoration, 4) Non-native species control, and 5) Community outreach and education. The deliverables associated with 2) Abundance and production of WCT were less clear in some cases and might be expanded or considered further as outlined below. The project's recent (2005-present) deliverable status has an average completion rate of 94% (170 of 180 deliverables). Incomplete deliverables have generally been carried forward into subsequent contracts and have been completed in nearly all instances.

Study Design: The study design was quite comprehensive, sophisticated, and well planned overall. We were very impressed with how well integrated the many components were. Specific points to consider that might improve the study results are:

A. As described above, estimates of spawner abundance, juvenile production, survival in the lake, juvenile abundance, survival rates in streams, and movements among habitat types might be more fully integrated using a design that could be analyzed in Program MARK as one large integrated analysis. In fact, data from two systems (Benewah Creek and Lake Creek) might be analyzed together, even if processes differ between them, and allow data to be "shared" across systems, increasing power to detect important effects (see Saunders et al. 2011 NAJFM for such an analysis of stream trout abundance estimates). 

B. We were unclear about whether rainbow trout are native in this watershed, and if not, what the status of rainbow trout invasion is. Could climate change potentially trigger new invasions? Work by Clint Muhlfeld in Glacier National Park seems to be showing the potential danger of such invasions, and how management might be used to reduce them.

C. Untreated controls are very useful, but it is not clear that they were selected at random. This is very difficult in such a large-scale study. However, one should describe how they were selected, how potential bias was reduced, and acknowledge that the comparison is useful but not a true treatment-control comparison. Several books like those by Brian Manly may help couch these comparisons in appropriate terms.

D. We had some concerns about the use of single-pass electrofishing to estimate CPUE across stream sites.

The deliverable is: DELV-2D: Indices of cutthroat trout abundance in stream reaches: Indices of cutthroat trout abundance in tributary and mainstem habitats in Lake, Benewah, Alder, and Evans creek watersheds will be annually computed employing single pass electroshocking at established 200 ft index sites. These annually computed indices will be used to track trends in cutthroat trout abundance at various spatial scales within watersheds, and to evaluate changes in the spatial distribution of cutthroat trout within mainstem and tributary reaches.

The authors justify the use of single-pass sampling based on a high correlation between the number of WCT captured on the first pass and the number of marked fish released the previous day after one-pass sampling. They state that the number estimated the second day from multiple-pass sampling underestimated the "true abundance" of marked fish released, and that this is likely due to biases inherent in depletion sampling described in two papers (Peterson et al. 2004; Rosenberger and Dunham 2005). 

Given that no block nets were used to enclose the marked fish, might the lower number estimated the second day be at least partly due to emigration of marked fish after their release the first day? Saunders et al. (2011, NAJFM) showed that depletion estimates can be accurate, based on a similar study design using fences, and a more complete analysis.

More importantly, the use of single-pass estimates as CPUE rests on the critical assumption that capture probabilities are equal across sites, years, and different crews, which may not be strictly true, or even similar. Thus, if single-pass estimates are to be used to reduce work load and therefore increase the spatial distribution of sampling, which is a good thing in this case, then it would seem wise to validate these capture probabilities on a systematic or probabilistic design. Otherwise, a large amount of data will likely not stand the rigors of scientific review, and hence conclusions could be discounted by others.

One practical point is that it appears that this deliverable currently requires only about 3% of the total funding for the project. Therefore, if the data to be generated are considered critical to the decisions made, then more funding and emphasis could be placed on generating estimates that can stand the rigor of review.

E. Under Deliverable 2E, we wondered whether analysis of age from scales could underestimate true ages. If so, it seems wise to validate these ages for a subsample of fishes using otoliths. Again, conclusions should rest on data that have been validated. In high-altitude streams, cutthroat trout may not grow enough the first year to create an annulus, for example. Likewise, older fish may resorb edges of scales, making annuli difficult to distinguish, and also leading to underestimates.

F. The Priority rankings in Table 6 are identical to the Management Sensitivity rankings, so it was unclear what new information is gained beyond this? Neither fish abundance nor wood abundance seems to influence priority.

G. In Table 7, it was unclear on what estimator these abundance estimates are based, and what is the level of confidence for the interval?

H. Is visibility sufficient to use snorkeling to determine whether WCT are using deep restored pools during summer?

I. We agree that an important hypothesis to test is whether adfluvial CT life histories can resist BK invasion better than isolated resident ones. If the study can be designed to measure this, the results would be very important, and should be published.

J. Along with the ideas being considered for control of brook trout, would it be cost effective to run several weirs to intercept moving brook trout, which tend to move as runoff is coming down, and for spawning (see Gowan and Fausch 1996 and Peterson and Fausch 2003, both in CJFAS)?

K. As support for increasing the complexity and resiliency of habitats to ameliorate climate change, and the potential for brook trout to be influenced more strongly than WCT, see the new paper by Wenger et al. (2011; Proceedings National Academy of Sciences). These findings are reported there. 4a. Specific comments on protocols and methods described in MonitoringMethods.org: See comments above.

4a. Specific comments on protocols and methods described in MonitoringMethods.org:

See comments above.

Modified by Dal Marsters on 4/13/2012 12:31:33 PM.
Documentation Links:
Review: FY07-09 Solicitation Review

Council Recommendation

Assessment Number: 1990-044-00-NPCC-20090924
Project: 1990-044-00 - Coeur D'Alene Reservation Fisheries Habitat
Review: FY07-09 Solicitation Review
Approved Date: 10/23/2006
Recommendation: Fund
Comments:

Independent Scientific Review Panel Assessment

Assessment Number: 1990-044-00-ISRP-20060831
Project: 1990-044-00 - Coeur D'Alene Reservation Fisheries Habitat
Review: FY07-09 Solicitation Review
Completed Date: 8/31/2006
Final Round ISRP Date: None
Final Round ISRP Rating: Meets Scientific Review Criteria
Final Round ISRP Comment:
Reviewers appreciate the focus, logic, and clarity provided by the response. That 15-page document showed evidence of a quality program with evidence of results, sound monitoring and a good potential for benefiting native resident fish. Upon reconsideration, although the original proposal had some deficiencies, the ISRP feels it should have given this a "response requested" in the initial review. In the current streamlined review process, with the absence of a site visit and verbal interactive presentations, it is more vital than ever that a proposal for an ongoing project adequately describe results and future plans. The original proposal for this project was extremely long (90+ pages), unfocused, and contained much semi-relevant material. When reviewers noted the absence of, for example, a description of how fish populations had changed over time, they reacted too critically. The trend and interannual abundance data provided in the response was nicely summarized and especially helpful.

As significantly clarified in this new material, the broad-based, long-term aquatic monitoring appears appropriate. There is clear utility of the monitoring to provide information for, for example, the land acquisition project 200204500 that apparently got much of its updated habitat and fish information from this project.

Reviewers appreciate the new discussion of the ongoing brook trout removal program and agree with sponsors that both the no-action and the fish toxicant alternatives are not preferred. Reviewers did not favor the approach that seemed to be advocated in the original proposal of "piecemeal" electrofishing continued over a number of years. That method usually removes juveniles and gives survivors ample time to compensate, leading to no gain in suppression. However, as described in the response, the actual plan is for annual, single-pass electroshocking the entire upper Benewah Creek watershed just prior to brook trout spawning to target adult brook trout. Reviewers react more favorably to that approach provided that a substantial fraction (much more than half) of adults is removed each time to preclude a rapid brook trout rebound. The data provided in the response does not identify what fraction of the population of brook trout adults is removed annually. Reviewers are skeptical and note that the most recent recommendation from Montana researchers calls for at least six removal treatments of two to three electrofishing passes per treatment within two to three years, and for trampling brook trout redds. The ISRP would not view the possible outcome that such annual single-pass removal might be effective, but be needed to be continued indefinitely, as constituting "success." Reviewers suggest that by the conclusion of the 07-09 funding cycle the ability/inability of sponsors' protocol to suppress brook trout should be apparent.
Documentation Links:
Explain how your project has responded to the above ISRP and Council qualifications, conditions, or recommendations. This is especially important if your project received a "Qualified" rating from the ISRP in your most recent assessment. Even if your project received favorable ratings from both the ISRP and Council, please respond to any issues they may have raised.
Response to past ISRP and Council comments and recommendations: View instructions
The ISRP has provided both general and specific comments pertinent to our work describing concerns with non-native species interactions and the potential life history specific effects on salmonids targeted for recovery (ISRP 2001-4). Recommendations included addressing these species and their management in province and subbasin summaries, noting that the success of resident fish projects can be seriously affected by predation.<br/> <br/> Recognizing that the in-lake survival of cutthroat trout was a critical knowledge gap in our recovery program, we initiated a juvenile tagging program in our targeted adfluvial watersheds in 2005. Data that have been collected from these monitoring efforts over the past five years have indicated that less than 2% of the juveniles outmigrating to the lake from these tributaries return to spawn as adults. These return rates are markedly lower than those that have been reported for adfluvial juvenile cutthroat trout in other similar lacustrine systems (Huston et al. 1984; Stapp and Hayward 2002). Although the processes that are apparently limiting survival are largely unknown, it is imperative to better understand whether predation is a predominant mechanism regulating survival rates in the lake.<br/> <br/> A few small-scale research studies conducted in CDA Lake over the last twenty years suggest that two non-native piscivorous species, northern pike (Esox lucius) and smallmouth bass (Micropterus dolomieu), could be significantly impacting cutthroat trout. In 2001-2002, the CDA Tribe conducted a broad, extensive study that focused on the diets of both native and nonnative piscivorous fish species across the lake. Although the study provided important information on the food habits of northern pike and smallmouth bass, sample sizes were extremely small and the temporal resolution was insufficient to detail food habits of both species during periods of high overlap with cutthroat trout. Rich (1992) conducted the most comprehensive study on northern pike in the CDA system in which population dynamics, food habits, and seasonal movements were evaluated. Cutthroat trout were found to be consumed by northern pike, but the frequency of cutthroat trout in the diet was highly variable among sampling locations. Notably, cutthroat trout typically comprised a higher proportion of the diet in bays near tributary inputs than in other portions of the lake. However, the study was somewhat limited in that it lacked the required temporal resolution to rigorously evaluate the predatory impact of northern pike on cutthroat trout. Similar comprehensive studies on smallmouth bass dynamics and dietary preferences in the system are lacking. Such studies are needed given that recent reports suggest that smallmouth populations may be substantially increasing in the lake (Maiolie et al. 2010).<br/> <br/> In systems with species of conservation concern or with native species that have recreational or consumptive value, northern pike and smallmouth bass can be problematic (McMahon and Bennett 1996; Fritts and Peasons 2006). For example, introduced smallmouth bass and northern pike in the upper Colorado River system prey on several rare and endangered fishes (e.g., Colorado pikeminnow Ptychocheilus lucius), and there is an active program focused on removing both species from the system (e.g., Bergersen 2001; Tyus and Saunders 2000; Johnson et al. 2008). Because of these concerns, a research study was collaboratively developed with the University of Idaho to fund a graduate student, over the period from June 2011 to December 2013, to investigate the predatory impacts of both northern pike and smallmouth bass on native cutthroat trout in CDA Lake.<br/> <br/> The primary goal of this work is to evaluate consumption of cutthroat trout by northern pike and smallmouth bass in CDA Lake and is intended to be accomplished with the following objectives:<br/> 1. Describe the population structure (e.g., size and age distribution) and derive demographic estimates (e.g., abundance, mortality, growth) for both piscivores;<br/> 2. Examine the seasonal dietary habits of both piscivores;<br/> 3. Incorporate population structure and demographic information along with feeding habits into bioenergetic models to estimate consumption rates; and,<br/> 4. Utilize the demographic and dietary information in simulation models to examine the prospects for management actions (e.g., regulation changes) to influence dynamics of both piscivores and the survival rates of cutthroat trout.


Project Level: Please discuss how you’ve changed your project (objectives, actions, etc) based on biological responses or information gained from project actions; because of management decisions at the subbasin state, regional, or agency level; or by external or larger environment factors. Specifically, regarding project modifications summarize how previous hypotheses and methods are changed or improved in this updated proposal. This would include project modifications based on information from recent research and literature. How is your new work different than previous work, and why?
Management Level: Please describe any management changes planned or made because of biological responses or information gained from project actions. This would include management decisions at the subbasin, state, or regional level influenced by project results.
Management Changes: View instructions
Project Planning Our approach to restoration has evolved over time to more successfully translate watershed analyses, resource inventories and assessments and monitoring results into the management actions needed to achieve project goals. The recent project history reflects a shift from opportunistic implementation of restoration projects to a more systematic approach of prioritizing management actions based on several peer-reviewed approaches (Reeves et al. 1995; Frissell and Bayles 1996; Beechie and Bolton 1999). In adapting these approaches to our watersheds, we used the results of recent assessments and long-term status and trend monitoring to define process-based objectives and criteria, providing benchmarks for achieving restoration goals and reducing impairment to watershed processes. We then developed prioritized lists of projects for each of the tributary basins providing critical spawning and early life-stage rearing opportunities for cutthroat trout. The prioritized list of projects provides a road map for better coordinating restoration efforts and designing monitoring programs to track project effectiveness at multiple scales. Habitat Restoration The implementation of large scale channel restoration in a 5.6 km reach of upper Benewah Creek has provided invaluable opportunities to apply adaptive management in developing the “toolbox” for restoring watershed and ecological processes. Specifically, we applied alternative management actions to achieve restoration goals and are using monitoring to evaluate the efficacy of these alternatives. After successfully implementing a Phase I restoration design in the lower 2.6 km of the project reach, we initially conceived a Phase II design based on a prevailing hypothesis that the entrenched channel form was the result of incision caused by land use. This hypothesis was based in part on the observation that floodplain inundation is presently restricted to flows higher than about the 5-year return interval event, whereas a more typical alluvial channel would have been expected to access the floodplain at a 1.5 to 2-year interval (Leopold et al. 1995). The corresponding level of incision was estimated to be approximately 1 m. The conventional solution which we had applied earlier included extensive earthwork constructing raised grade controls and riffles in the incised channel. We settled initially on the approach of relocating the stream to relict and new channels, using valley-wide floodplain stratigraphy to define the appropriate riffle control elevation for design. Our key hypothesis was that if the channel had incised, there would be stratigraphic layers of alluvial gravel in the adjacent floodplain located at elevations that were higher than in the present channel. The elevation of alluvial gravel deposits would accordingly define the design thalweg elevation and new channel width needed to convey bankfull flow. To evaluate this hypothesis, test pits were excavated at four relict channel locations distributed across the valley floor to determine the depth to historic alluvial gravel deposits. However, test pit results provided direct evidence of an alternative channel forming process, leading us to reconsider the historic mechanism whereby floods may have engaged the floodplain on an approximately annual basis. Floodplain stratigraphy did not indicate alluvial gravel deposits at elevations consistent with geologically recent (i.e., within past 200 years) incision. Instead, test pit excavations consistently showed a cobble-gravel layer at elevations comparable to those found in the current channel thalweg, with an overlaying layer of fairly uniform silt-loam formed predominantly through wind-borne deposition. Given these findings, we concluded that the channel had likely not incised significantly, historic channel migration had occurred slowly, and that the natural width:depth ratio was likely narrower than would be expected for a typical alluvial channel. In view of the relatively long return period of floods needed to inundate the current floodplain and the evidence of an extensive historic floodplain forest in poorly drained soil, some process other than alluvial channel mechanics must have supplied overbank water for woody vegetation growth and maintenance. One plausible hypothesis was that beaver historically played an important role by constructing dams that raised the water level during spring runoff (see Ruedemann and Schoonmaker 1938; Naiman et al. 1988; Rosell et al. 2005). The resulting flow obstructions would have provided a mechanism for floodplain connectivity, thereby promoting maintenance and growth of riparian vegetation (Westbrook et al. 2006). Following removal of the valley forest, beaver trapping, and 70+ years of cattle grazing, the effective flood level control provided by flow obstructions and the associated upstream gravel accumulations was likely removed, resulting in less frequent and shorter duration inundation of the valley floor during runoff events. This may, in turn, have hindered recovery of the floodplain forest, which would have provided the large wood that our monitoring indicates is important for dam stability (Vitale and Firehammer 2011). Given these changes and observations, we felt that a highly efficient means of increasing flood frequency and duration was to construct temporary structures that would emulate the hydraulic effects of beaver dams, and to ensure that they would persist long enough for larger trees to become established. Brook Trout Removal Given that our restoration actions may improve brook trout rearing habitats in the upper Benewah mainstem, it is imperative that we offset these unintended benefits and create recruitment bottlenecks at other vital life stages. Thus, our current suppression approach has refocused tactics toward curbing reproductive success. As of 2009, shocking efforts have been concentrated in a 2 km mainstem reach where adult densities have been found to be the greatest. Moreover, suitable spawning substrate is apparently more prevalent in this reach than downriver reaches which are dominated by low-gradient, depositional beaver dam pools. We are also inhibiting access to suitable spawning habitats by installing temporary barriers in several locations. The barriers were configured to serve as an enclosure that could intercept and retain brook trout that were ascending from downriver. A noticeable shift in the length distribution of brook trout removed from the 2.0 km index reach has been observed over the last two years compared with previous years (Figure 17). In 2005, approximately 45% of the fish were considered YOY (i.e., ~80-85 mm). Similarly, YOY constituted around 55% of removed fish in 2009, the first year of enclosure deployment. In comparison, approximately 25 and 15% of the fish removed were considered YOY in 2010 and 2011, respectively. Further, CPUE of brook trout of all sizes has markedly decreased within the index reach since 2009 (Figure 14). There is a concern that our index reach does not reflect mainstem-wide trends, and that the barrier is forcing adults to utilize mainstem habitats downriver. However, mean values of first pass indices of abundance for brook trout have decreased from 20.1 fish/100 m (s=7.6) in 2009 to 11.5 fish/100 m (s=8.7) in 2011 for four mainstem index sites downriver of the barrier. Several more years of monitoring will allow us to evaluate whether results were due to regionally unfavorable reproductive conditions or were the result of spawning inhibition due to our current management approach. In addition, given the inordinate amount of time that was being annually allocated to shocking deep pools in 5.6 km of restored habitats prior to 2009, we have been able to reduce our crew effort by 73%. Over time, if these methods prove successful, than we may be able to further reduce the frequency at which we conduct our suppression measures. Several years of consecutive removals followed by a couple years of suspended implementation may minimize the costs of the program but still provide benefits to our cutthroat trout population (Peterson et al. 2008b). In addition, refraining from removing fish over a year or two will allow us to examine the compensatory resilience of brook trout in the Benewah watershed (Meyer et al. 2006). Limiting Factors in Lake Coeur d’Alene Given that recent PIT-tag data suggest that adfluvial juvenile-to-spawner return rates are exceptionally low in our monitored systems, we are placing a stronger emphasis on understanding the processes and mechanisms that are impacting the suitability of rearing habitats in Lake Coeur d’Alene. As an initial step toward this management goal, a collaborative study with the University of Idaho is currently underway to better understand whether predation by northern pike and smallmouth bass is a predominant mechanism regulating juvenile in-lake survival rates. Contingent on the findings of this study, various management alternatives to reduce this source of mortality will likely be considered for implementation. Incidentally, even if the study finds that both piscivores are not substantially impacting juvenile survival rates in the lake, at least that knowledge permits other hypotheses to be developed and research re-directed elsewhere to address the low in-lake survival rates. This does not imply a shift in management direction from addressing limiting factors in stream environments to those in the lake, but an understanding that both rearing habitats must be collectively addressed to recover adfluvial cutthroat trout populations. Currently, we may not be able to detect a population response to our in-stream habitat restoration if stream densities are dictated by adfluvial production. Implementing actions in the lake to improve juvenile return rates should provide the spawners necessary to seed restored stream habitats and increase in-stream production

The table content is updated frequently and thus contains more recent information than what was in the original proposal reviewed by ISRP and Council.

Public Attachments in CBFish

ID Title Type Period Contract Uploaded
10544-1 Fisheries Habitat Evaluation on Tributaries of the Coeur d'Alene Indian Reservation Progress (Annual) Report 10/1989 - 09/1990 1/1/1991 12:00:00 AM
10544-2 Fisheries Habitat Evaluation on Tributaries of the Coeur d'Alene Indian Reservation Progress (Annual) Report 10/1990 - 09/1991 2/1/1993 12:00:00 AM
10544-3 Fisheries Habitat Evaluation on Tributaries of the Coeur d'Alene Indian Reservation Progress (Annual) Report 10/1991 - 09/1992 10/1/1993 12:00:00 AM
10544-4 Fisheries Habitat Evaluation on Tributaries of the Coeur D'Alene Indian Reservation Progress (Annual) Report 10/1992 - 09/1994 9/1/1996 12:00:00 AM
10544-5 Coeur d' Alene Indian Reservation Supplementation Feasibility Progress (Annual) Report 10/1993 - 09/1997 8/1/1998 12:00:00 AM
00010885-6 Coeur d'Alene Tribe Fish and Wildlife Program Habitat Protection Plan Progress (Annual) Report 10/1996 - 09/2002 10885 6/1/2002 12:00:00 AM
00010885-5 Coeur d'Alene Tribe Fisheries Program Research, Monitoring, and Evaluation Plan Progress (Annual) Report 10/1996 - 09/2002 10885 11/1/2002 12:00:00 AM
R10544-6 Fisheries Habitat Evaluation on Tributaries of the Coeur D'Alene Indian Reservation Progress (Annual) Report 10/1996 - 09/1998 10885 6/1/2003 12:00:00 AM
00010885-1 Implementation of Fisheries Enhancement Opportunities on the Coeur d'Alene Reservation Progress (Annual) Report 10/2001 - 09/2002 10885 12/1/2003 12:00:00 AM
00010885-2 Implementation of Fisheries Enhancement Opportunities on the Coeur d'Alene Reservation Progress (Annual) Report 10/2001 - 09/2002 10885 4/1/2004 12:00:00 AM
00010885-3 Implementation of Fisheries Enhancement Opportunities on the Coeur d'Alene Reservation Progress (Annual) Report 10/2002 - 09/2004 10885 7/1/2004 12:00:00 AM
10544-6 Implementation of Fisheries Enhancement Opportunities on the Coeur d'Alene Reservation Progress (Annual) Report 10/1995 - 09/1998 2/1/2006 12:00:00 AM
00010885-4 Implementation of Fisheries Enhancement Opportunities on the Coeur d'Alene Reservation Progress (Annual) Report 10/1998 - 09/2001 10885 2/1/2006 12:00:00 AM
00010885-7 Implementation of Fisheries Enhancement Opportunities on the Coeur d'Alene Reservation Progress (Annual) Report 06/2004 - 05/2005 10885 6/1/2006 12:00:00 AM
P109419 Implementation of Fisheries Enhancement Opportunities on the Coeur d’Alene Reservation - 2006 Annual Report Progress (Annual) Report 01/2006 - 12/2006 33533 12/12/2008 12:15:45 PM
P113336 Implementation of Fisheries Enhancement Opportunities on the Coeur d'Alene Reservation Progress (Annual) Report 01/2007 - 12/2007 9/8/2009 9:57:14 AM
P115039 Implementation of Fisheries Enhancement Opportunities on the Coeur d'Alene Reservation Progress (Annual) Report 01/2008 - 12/2009 42560 1/27/2010 9:07:25 AM
P123343 Implementation of Fisheries Enhancement Opportunities on the Coeur d'Alene Reservation, 2009 Annual Report Progress (Annual) Report 01/2009 - 12/2009 47583 10/17/2011 12:30:57 PM
P125995 Implementation of Fisheries Enhancement Opportunities on the Coeur d' Alene Reservation; 1/10 - 12/10 Progress (Annual) Report 01/2010 - 12/2010 52937 4/10/2012 10:23:41 AM
P132893 Implementation of Fisheries Enhancement Opportunities on the Coeur d'Alene Reservation Progress (Annual) Report 01/2011 - 12/2012 57531 7/23/2013 2:18:01 PM
P149095 Implementation of Fisheries Enhancement Opportunities on the Coeur d'Alene Reservation Progress (Annual) Report 01/2013 - 12/2014 69003 6/7/2016 10:33:02 AM
P155749 Implementation of Fisheries Enhancement Opportunities on the Coeur d'Alene Reservation Progress (Annual) Report 01/2015 - 05/2017 72851 9/6/2017 10:12:02 AM
P159013 Implementation of Fisheries Enhancement Opportunities on the Coeur d'Alene Reservation, RM&E Report Progress (Annual) Report 01/2015 - 12/2017 76243 1/24/2018 2:47:35 PM
P165615 Implementation of Fisheries Enhancement Opportunities on the Coeur d'Alene Reservation; 1/18 - 12/19 Progress (Annual) Report 01/2018 - 12/2019 76828 REL 1 6/12/2019 12:26:50 PM
P170253 Implementation of fisheries enhancement opportunities on the Coeur d'Alene Reservation; 1/18 - 12/19 Progress (Annual) Report 01/2018 - 12/2019 76828 REL 4 1/17/2020 10:03:34 AM
P170255 Implementation of fisheries enhancement opportunities on the Coeur d'Alene Reservation; 6/17 - 12/19 Progress (Annual) Report 06/2017 - 12/2019 76828 REL 4 1/17/2020 11:16:44 AM
P173124 Implementation of Fisheries Enhancement Opportunities on the Coeur d’Alene Reservation Photo - 5/7/2020 5:44:05 PM
P173127 Implementation of Fisheries Enhancement Opportunities on the Coeur d’Alene Reservation Photo - 5/7/2020 5:44:05 PM
P173126 Implementation of Fisheries Enhancement Opportunities on the Coeur d’Alene Reservation Photo - 5/7/2020 5:44:05 PM
P173129 Implementation of Fisheries Enhancement Opportunities on the Coeur d’Alene Reservation Photo - 5/7/2020 5:44:05 PM
P173132 Implementation of Fisheries Enhancement Opportunities on the Coeur d’Alene Reservation Photo - 5/7/2020 5:44:05 PM
P173125 Implementation of Fisheries Enhancement Opportunities on the Coeur d’Alene Reservation Photo - 5/7/2020 5:44:05 PM
P173128 Implementation of Fisheries Enhancement Opportunities on the Coeur d’Alene Reservation Photo - 5/7/2020 5:44:05 PM
P173131 Implementation of Fisheries Enhancement Opportunities on the Coeur d’Alene Reservation Photo - 5/7/2020 5:44:05 PM
P173134 Implementation of Fisheries Enhancement Opportunities on the Coeur d’Alene Reservation Photo - 5/7/2020 5:44:05 PM
P173130 Implementation of Fisheries Enhancement Opportunities on the Coeur d’Alene Reservation Photo - 5/7/2020 5:44:05 PM
P173133 Implementation of Fisheries Enhancement Opportunities on the Coeur d’Alene Reservation Photo - 5/7/2020 5:44:05 PM
P209193 Coeur d’Alene Subbasin Fisheries Restoration and Enhancement: Research, Monitoring, and Evaluation Report, 1/1/2022 – 12/31/2023 Progress (Annual) Report 01/2022 - 12/2023 84053 REL 3 5/16/2024 12:29:20 PM

Other Project Documents on the Web



The Project Relationships tracked automatically in CBFish provide a history of how work and budgets move between projects. The terms "Merged" and "Split" describe the transfer of some or all of the Work and budgets from one or more source projects to one or more target projects. For example, some of one project's budget may be split from it and merged into a different project. Project relationships change for a variety of reasons including the creation of efficiency gains.
Project Relationships: None

Additional Relationships Explanation:

BPA 199206100 – Albeni Falls Wildlife Mitigation
The Coeur d’Alene Tribe’s Albeni Falls Wildlife Mitigation Project serves to mitigate for wildlife habitat losses attributed to the construction and inundation of Albeni Falls Dam.  To date the Coeur d’Alene Tribe has credited 3,676 HUs against Albeni Falls Wildlife losses. One of the properties purchased by the Coeur d’Alene Tribe encompasses 411 acres in the Benewah Creek Watershed including nearly 3.2 miles of the upper mainstem of Benewah Creek and the lower portions of several spawning tributaries. The property includes critical rearing habitats for westslope cutthroat trout in the watershed and has been the focus of restoration and monitoring activities implemented under BPA project 199004400 since 2002. Restoration goals include recovery of geomorphological and ecological processes to improve the production potential for westslope cutthroat trout. Effectiveness monitoring of restoration activities will continue during this proposal to determine the specific linkages between restoration and habitat utilization, abundance and distribution of cutthroat trout as well as possible effects on growth and survival.

Additional properties may also be purchased during the course of this proposal where Albeni Falls mitigation priorities overlap with high priority areas identified by BPA project 199004400. In these areas, Project proponents will assess the fisheries restoration and enhancement needs, then design and implement appropriate restoration measures to maximize the habitat potential for target species.

Bonneville Environmental Foundation (BEF) – Benewah Creek Model Watershed Project.
The BEF board of directors established a 10-year funding partnership with the Coeur d’Alene Tribe beginning in 2005 to support restoration and monitoring in Benewah Creek, distinguishing Tribal efforts with their Model Watershed Project status. BEF has committed more than $100,000 during this time frame to fund the Coeur d’Alene Tribe Fisheries Program to strengthen watershed-scale monitoring in Benewah Creek by developing a robust effectiveness monitoring program to inform implementation of restoration actions. Qualifying for BEF Model Watershed funding required development of detailed monitoring objectives and benchmarks to facilitate tracking progress in meeting recovery goals in the watershed. The Model Watershed Project, in turn, has undergone an independent science review on several occasions, with BEF providing funding in addition to the grant award to facilitate the process. Grant monies have been used to establish a weather station and stream gage to collect continuous measurements of discharge, temperature, turbidity and TSS that supplement our collection of discrete data at sites along the longitudinal profile of Benewah Creek and tributaries. Data acquisition and analysis supports modeling of temperature effects on production of native westslope cutthroat trout, an important cultural and biological resource to the Coeur d’Alene Tribe.

Avista Corporation – Spokane River Hydroelectric Project
In 2009, the Federal Energy Regulatory Commision (FERC) issued a 50-year operating license to Avista for its Spokane River Hydroelectric Project, which includes the Post Falls HED in the Coeur d’Alene Subbasin.  Under the provisions of the Federal Power Act, the hydroelectric license issued by FERC included mandatory conditions providing provisions for protecting and enhancing the Tribe’s natural and cultural resources and providing the Tribe with appropriate compensation for the Project’s use of its lands and waters.  Specific license conditions for the Post Falls HED, pertinent to this BPA funded project, require the applicant to provide assistance and financial support for the follwoing:
1. To ensure protection of federally listed bull trout and its designated critical habitat, Avista is required to implement its proposed non-native predator fish removal program. The program will consist of a three-year study of bull trout predation by non-native fish in Coeur d’Alene Lake and the lower St. Joe River, and, if predation is documented, implement measures to reduce the potential for non-native fish predation on bull trout.
2. The license requires Avista to develop and implement a fishery protection and enhancement plan for native Westslope cutthroat trout and bull trout. The plan will include provisions for conducting fish population assessment and monitoring activities, and implementing enhancement actions and a fisheries public education and outreach program specific to Westslope cutthroat trout and bull trout in the Coeur d’Alene Lake basin.
3. The license requires Avista to develop and implement a Coeur d’Alene Indian Reservation wetland and riparian habitat plan and to restore or replace at least 1,368 acres of wetlands within or adjacent to the Coeur d’Alene Indian Reservation.

Implementation of these license conditions will provide direct cost share opportunities during the course of the 50-year license beginning in 2009. Where the priorities for meeting these license conditions intersect with objectives for BPA Project 199004400, Avista funding will directly contribute to meeting project benchmarks for improving habitats, through purchase, protection and restoration of wetlands, and in addressing in-lake survival of native salmonids through programs designed to reduce predation effects by non-native fishes.

Coeur d’Alene Tribe – TMDL Development and Implementation
The Coeur d’Alene Tribe Water Resource Program has received more than $1,000,000 in combined funding from EPA, the Bureau of Reclamation, and other sources since 2001 to collect water quality data, develop watershed assessments, and assist in the development of TMDL’s for the Lake, Benewah and Alder creek watersheds.  This data has been useful in identifying limiting factors and prioritizing restoration treatments.  Following the development of TMDL’s, the Water Resource Program will prepare implementation plans to achieve sediment reduction goals for each of the respective watersheds.  These plans will be complementary to ongoing restoration activities provided by BPA Project 199004400 and will help provide cost shares for implementation in the future.

Coeur d’Alene Tribe – (NRDA) Restoration Activities and Superfund Implementation Oversight
In 1983, The US EPA listed the Bunker Hill Mining and Metallurgical Complex Site as a Superfund Site on the National Priorities List. This initiated what was to become a massive superfund cleanup in the Tribes’ homeland. Seeing that neither EPA nor the State of Idaho was fully addressing mining pollution, the Tribe initiated a Natural Resource Damage Assessment in 1991 with the objective of restoring the natural resources that were injured due to the release of hazardous waste from historical mining activities. In 1996, the Federal Trustees represented by the Dept. of Interior (USFWS and BLM) and Dept. of Agriculture (USFS) joined in the lawsuit. During this time significant scientific data were collected in preparation for NRD litigation. The natural resource injuries that were documented (and later acknowledged in District Court) included: surface water, ground water, riparian resources, benthic macro invertebrates, phytoplankton, fish, birds, soils, and sediments. The Tribe spent over a decade determining injury to natural resources and compiling information that will be invaluable in restoring, rehabilitating, replacing, and/or acquiring equivalent natural resources in the Coeur d’Alene Basin.

In 2007, the Tribe and Federal Trustees developed the Interim Restoration Plan which identified management alternatives to begin restoration. To date, some restoration of fisheries resources on Reservation streams has been implemented to replace lost habitat, and lost fisheries resources in the polluted Coeur d’Alene River system. In addition as of September 2011, the Tribe, State of Idaho, and Federal Trustees settled with the final potential responsible party in the basin (thus ending the 20 year court case) and have begun allocating settlement funds for the development of a Programmatic Environmental Impact Statement where basin-wide restoration activities will be identified. There were previous settlement funds that were allocated towards lake management activities and the restoration or replacement of riparian resources. Concurrent with restoration planning and implementation, EPA continues to implement their Record of Decision documents under Superfund. EPA superfund remedial actions are being coordinated through the Coeur d’Alene Basin Environmental Improvement Project Commission (the Basin Commission), a forum established through Idaho statute to provide local oversight of all EPA remedial actions. As a voting member of this 7 member Board, the Tribe has endorsed numerous studies and projects to address water quality issues and has sponsored projects which reduce nutrient loading to Coeur d'Alene Lake and the entire basin watershed. These projects have direct impact on the lake’s water quality, fisheries resources, and have provided a wealth of data with which to understand lake water quality dynamics. Coordination of BPA funded activities with the implementation of remedial actions conducted through the Basin Commission will have significant positive benefits in recovering Coeur d’Alene Subbasin cutthroat trout metapopulation dynamics.


Primary Focal Species
Cutthroat Trout, Westslope (O. c. lewisi)

Secondary Focal Species
Trout, Bull (S. confluentus) (Threatened)

Describe how you are taking into account potential biological and physical effects of factors such as non-native species, predation increases, climate change and toxics that may impact the project’s focal species and their habitat, potentially reducing the success of the project. For example: Does modeling exist that predicts regional climate change impacts to your particular geographic area? If so, please summarize the results of any predictive modeling for your area and describe how you take that into consideration.
Threats to program investments and project success: View instructions
Climate change and associated global warming are likely to cause impacts to stream systems within the Coeur d’Alene subbasin.  These impacts include warmer stream temperatures, earlier stream runoff, reduced snow pack, reduced summer base-flows, and more frequent floods, particularly in the form of rain-on-snow events (Battin et al. 2007; Seavy et al. 2009; Mote et al. 2003).  

Coeur d’Alene Lake is expected to be a refuge area for the adfluvial cutthroat trout life history as temperatures increase.  Stratification of the lake during the warm summer months enables cutthroat trout to go below the thermocline to seek refuge from warm surface waters.

Warmer stream temperatures can impact growth rates, increase disease, increase stress, and decrease the ability of the cutthroat trout to compete with brook trout.  Increasing the quantity and quality of pool habitat and riparian cover within our tributary habitats will be important to mitigate expected warmer stream temperatures.  We have found at our restoration sites, that deep pools provide refuge areas with cooler water temperatures than nearby riffles (Vitale et al., 2007).   We also have identified refuge areas where year-round springs enter our stream systems.  Keeping and improving the connection of these cold-water springs with the stream will help provide further refuge areas.  We have been actively planting the riparian areas to increase stream cover following restoration work.  Increased cover will help reduce stream temperatures, particularly in shallow areas. An increase in riparian plant distribution and abundance will help protect our streams against higher peak flow events because these species are adapted to extreme conditions over upland plants (Seavy et al. 2009).  

Increasing and protecting the amount of wetland habitat in our project watersheds is essential to offsetting the impacts of climate change.  These wetlands will provide important water storage and will help dissipate energy during flood flows. They will help absorb heat and buffer against extreme temperatures (Seavy et al. 2009). Many of our new restoration approaches incorporate the idea of using beavers to restore degraded habitat that is incised and entrenched. Studies have shown that beavers can influence high and low flow hydrologic processes such that groundwater levels can be raised in the vicinity of dams and adjacent downstream reaches (Westbrook et al, 2006).  It is expected that increasing the stability of the beaver dams in degraded reaches will help mitigate the expected more frequent and larger flood events predicted by climate change.   Beaver dams will help store water for summer flows.

Earlier snowpack melt and more frequent winter rain-on-snow events will likely increase the amount of scour in our project streams due to an increased portion of winter participation falling as rain (Battin et al. 2007).  This flashy hydrology due to rain-on-snow events may lead to lower egg to fry survival.   This increase scour will likely impact brook trout redds more than cutthroat redds due to the timing of spawning and the location of the brook trout redds in mainstem reaches.   The advantage brook trout have over cutthroat related to temperature may be mitigated by lower brook trout egg to fry survival.
  
Due to climate change uncertainty, we must continue to protect critical spawning and rearing habitats, increase habitat complexity to provide deeper pools, increase connectivity by eliminating fish barriers, increasing forest cover in the watershed to help reduce peak flows, increase riparian buffers, and educate the public about the issues facing cutthroat trout.  Continued monitoring and adaptive management will be essential in dealing with the uncertainty of climate change.

Work Classes
Work Elements

Habitat:
Habitat work elements typically address the known limiting factors of each location defined for each deliverable. Details about each deliverable’s locations, limiting factors and work elements are found under the Deliverables sections.

22. Maintain Vegetation
29. Increase Aquatic and/or Floodplain Complexity
30. Realign, Connect, and/or Create Channel
33. Decommission Road/Relocate Road
38. Improve Road for Instream Habitat Benefits
40. Install Fence
47. Plant Vegetation
55. Erosion and Sedimentation Control
85. Remove/Breach Fish Passage Barrier
180. Enhance Floodplain/Remove, Modify, Breach Dike
181. Create, Restore, and/or Enhance Wetland
184. Install Fish Passage Structure
186. Operate and Maintain Habitat/Passage/Structure
190. Remove, Exclude and/or Relocate Animals
197. Maintain/Remove Vegetation
RM & E and Data Management:
157. Collect/Generate/Validate Field and Lab Data
158. Mark/Tag Animals
70. Install Fish Monitoring Equipment
160. Create/Manage/Maintain Database
162. Analyze/Interpret Data
Planning and Coordination:
99. Outreach and Education
114. Identify and Select Projects
175. Produce Design
191. Watershed Coordination
122. Provide Technical Review and Recommendation
BPA Internal Operations:
5. Land Purchase and/or Conservation Easement
Populations Origin # of PIT Tags per year Type of PIT Tag Years to be tagged Comments
Cutthroat Trout, Westslope (O. c. lewisi) Wild 2000 HDX - Half Duplex 2013 - 2017 Juveniles tagged during the summer/fall in stream habitats, and those tagged during spring outmigration periods will be double-marked with an adipose clip to assess short and long term tag retention. Adult spawners that are intercepted by traps during their upriver migration will also be opercle-punched to serve as a temporary but recognizable mark during post-spawn recapture events. This double mark will serve to evaluate retention of PIT tags implanted into adult spawners.
Please explain why the tagging technology used in this project was selected. Include a discussion of how the cost and applicability of the selected tagging technology influenced your selection. Enter "NA" if not applicable to your project.
Our project selected PIT-tags for several reasons. First, we chose PIT tags (i.e., 12 mm FDX) because we required a small tag that would have minimal impacts on juvenile fish that typically ranged between 100 and 175 mm in length. Second, given that we were interested in examining return rates of juveniles that may be at large 2 to 3 years in the lake, we needed a tag that would not be constrained by limited battery life. Third, we required a unique tag that would permit an evaluation of the history of the fish at time of interrogation. For example, we wanted to examine whether juvenile attributes at time of tagging, such as length and outmigration timing, influence the probability of a fish returning to spawn. Fourth, PIT-tags were considered versatile given that they could be used to tag outmigrating juveniles for trap efficiency studies and also be used to examine return rates. In a similar vein, PIT tagging fish in tributary habitats could serve to provide in-stream survival estimates, and examine both overwintering movements and the percentage of fish that adopt the adfluvial strategy. Fifth, PIT tags are inexpensive enabling a large number of fish to be tagged, which would be necessary to obtain the sample size needed to rigorously evaluate survival rates in our system. We are in the process of switching over to HDX technology with the advent of the smaller sizes of available HDX tags. This technology will allow us to construct our own fixed HDX stations for less than a tenth of the cost of a FDX fixed station, and thus permit a greater degree of versatility and flexibility in the number and location of interrogation stations installed across our watersheds. Given the range in widths of our streams (7-25 ft wide), HDX fixed antennas could be constructed that would span the entire channel but still permit high probabilities of tag detection, and consequently improve the precision of survival estimates.
Describe any of the innovative approaches that your projects proposes that are in direct support of the ISAB/ISRP's recommendations to improve techniques for surgical insertion of internal tags, or external attachment of acoustic, radio, or data storage tags that reduce handling time, fish injury and stress. Enter "NA" if not applicable to your project.
NA
For specific tagging technologies, please address the tagging report's recommendations for genetic markers, otolith thermal marking, PIT tags, acoustic tags and radio tags for improving technologies in any way applicable. Enter "NA" if not applicable to your project.
Our project is proposing to “ramp-up” PIT tagging efforts, specifically in tributary habitats during summer and fall periods to better understand movements, productivity, and life-history diversity of cutthroat trout within our adfluvial watersheds. The patterns and phenomena that we propose to examine are similar to those that were outlined in the Appendix of the ISRP/ISAB 2009 Tagging Report under the Future Development for Instream PIT tagging Applications (p.52-53). For example, we are proposing to install directional HDX antenna arrays downstream of primary spawning/rearing tributaries to examine fall and winter movements of tagged fish to better understand whether restored mainstem reaches are being used as overwintering habitat. We also lack an understanding of which tributaries support adfluvial production in our watersheds. Fixed interrogation stations positioned in tributaries will permit an evaluation of which tributaries are being selected by tagged adfluvial spawners. Furthermore, by evaluating detection data of fall-tagged fish during subsequent juvenile outmigration periods, these stations should permit an evaluation of the life-history strategy, resident or adfluvial, adopted by juveniles and whether there are differences among tributaries. Such information, in combination with habitat assessments, may in turn reveal limiting factors that may be inhibiting the expression of either life-history strategy in juvenile cutthroat trout within our system. Implemented PIT-tag technology in our tributaries will also allow us to assess population level responses to our habitat restoration actions, such as changes in tributary survival rates or possibly changes in the proportion of juveniles that express the migratory life history strategy.
If your project involves ocean port sampling and lower river sampling for coded wire tag (CWT) recovery, address the tagging and tag recovery issues (statistical validity of tagging rates, tag recovery rates, and fishery sampling rates) presented in the Pacific Salmon Commission's Action Plan to Address the CWT Expert Panel (PSC Tech. Rep. No. 25, March 2008).
NA
Explain how your tagging and tag recovery rates ensure a statistically valid result for your project. Enter "NA" if not applicable to your project.

We intend to PIT tag approximately 250 fish annually during summer/fall periods per targeted tributary in each of our two adfluvial watersheds to generate tributary-specific survival rates.  This sample size was based on survival and detection probabilities that were generated by studies that conducted mark-recapture experiments to examine in-stream survival rates of cutthroat trout (Budy et al. 2007; Berger and Greswell 2009) and bull trout (Al-Chokhachy and Budy 2008).  We used estimates from these studies because we did not have any empirically-derived estimates in our watersheds.  Moreover, these studies were examining phenomena (e.g., differences in survival rates of migratory versus resident variants) and using sampling methodologies (e.g., active and passive recaptures with PIT-tag antennas) that were analogous to our proposed project.  The range of estimated survival and detection probabilities taken from these studies were 0.3-0.5 and 0.4-0.6, respectively.  Given an initial release size of 250 fish, combinations of probabilities within these ranges were input into the program SampleSize v. 2.0.9 (University of Washington, Seattle WA) and precision levels generated for the survival parameter.  Coefficients of variation for all simulated scenarios did not exceed 15%, and many were <10%.  Based on this analysis, we considered a release size of 250 tagged fish to be a feasible target that would ensure a statistically valid level of precision within the constraints imposed by expected levels of sampling effort.

Please describe which opportunities have been explored to restore or reintroduce resident native fish and their habitats?
The goals and objectives of the proposed project is to recover populations of native westslope cutthroat trout in the Coeur d'Alene Basin to sustainable and harvestable levels, and to restore the habitats and the naturally-functioning processes that give rise to these habitats on which this species depends. Thus, this project has and will be exploring opportunities and implementing actions to restore resident cutthroat trout and its habitats.
Has a loss assessment been completed for your particular subbasin/or province?
No
Describe how the project addresses the loss assessment. If a loss assessment is in progress or being proposed, describe the status and scope of that work.
A loss assessment has not been completed for the Coeur d'Alene subbasin.
If you are using non-native fish species to achieve mitigation, have you completed an environmental risk assessment of potential negative impacts to native resident fish?
No
Please describe: for the production of non-native fish, what are the potential impacts on native fish populations, including predation, competition, genetic impacts, and food web implications?
We are not using non-native fish to achieve mitigation.
Does your proposed work support or implement a production goal identified in a USFWS Bull Trout Recovery Plan?
No
What tools (e.g., guidance material, technologies, decision support models) are you creating and using that support data management and sharing?
Data management is conducted using spreadsheet software to enter and proof data that are collected and/or analyzed during RME activities. These data are formatted so that they can be entered into a master data set that is built using database software (e.g., Microsoft Access). Currently, we don't have any established infrastructure for enabling sharing of data, other than that which is reported in annual reports and located on the BPA website.
Describe the process used to facilitate receiving and sharing of data, such as standardizing data entry format through a template or data steward, including data exchange templates that describe the data collection methods, and the provision of an interface that makes data electronically accessible.
Our project currently does not have a standardized process for receiving and sharing of data.
Please describe the sources from which you are compiling data, as well as what proportion of data is from the primary source versus secondary or other sources?
All of the data that are being compiled and managed are field data that come from primary sources.
Please explain how you manage the data and corresponding metadata you collect.
We are collecting data describing physical (e.g., large woody debris measurements, canopy cover percentages) and chemical (e.g., temperature) attributes associated with stream and riparian habitats. We also also collecting biological data that describe metrics associated with individuals (e.g., length, weight, age, maturation) and populations (e.g., density, abundance, movement rates, survival rates) of target native species and introduced non-native species. We also collect and manage PIT-tag interrogation data from fixed stations and mobile surveys. Supporting metadata are maintained with the field data, but we have yet to follow any regional standards that have been developed for metadata documentation.
Describe how you distribute your project's data to data users and what requirements or restrictions there may be for data access.
Data compiled and analyzed from field activities are presented in text and in tabular and graphical format that are included in annual reports that are accessible on the BPA website. This is in accordance with the Program's charge that "Data and metadata must be compiled, analyzed, and reported annually...(p. 26, 2009 Program guidance).
What type(s) of RM&E will you be doing?
Project Implementation Monitoring
Status and Trend Monitoring
Action Effectiveness Research
Uncertainties Research (Validation Monitoring and Innovation Research)
Project Compliance Monitoring
Where will you post or publish the data your project generates?

The Large Habitat Program section is required because you selected one or more of the following work elements in Edit Types of Work: 114

Instructions: As applies to your project, please describe your methods to solicit, review, prioritize and select habitat projects as outlined here. You should also reference any related documents attached that further explain your methods.

Describe all the steps in the program's process to solicit, review, prioritize, and select habitat projects for implementation. Explain how the solicitation process incorporates or is consistent with other similar regional or state processes as appropriate. The following outlines the information to include:

Solicitation: Describe in detail the solicitation process and criteria. Include how the announcement is communicated and who is included in the communication, eligibility criteria for submitting proposals, types of projects funded, expressed priorities, and any other applicant requirements.

Review: Include and describe the review/scoring/prioritization criteria used to determine and select technically feasible projects. Discuss how you incorporate current scientific information and limiting factors to support the prioritization of projects. Describe feasibility factors that affect priority such as land ownership, permitting, cost, cost/benefit ratio, risk, etc. Also describe the review process, provide the resumes and qualifications of the review panel and explain how potential conflict of interest issues are avoided in regard to project prioritization.

Selection: Describe who makes funding recommendations and who makes final funding decisions. Describe all steps in this process including how potential conflicts of interest are avoided with regard to project funding.

Large Habitat Programs: View instructions
We used watershed assessments and long-term monitoring data as the basis for developing and ranking habitat projects and soliciting landowner interests to implement priority actions in a coordinated fashion. These data provided the critical understanding of natural potentials as they relate to sediment, flood hydrology and riparian and channel function, and the degree to which restoration efforts can move habitats toward a re-expression of natural habitat capacity and quality. We first developed specific process-based objectives and criteria for describing impairment to these watershed process functions that would be useful in identifying the restoration actions needed to achieve habitat goals and in prioritizing those actions. Subsequently, we selected an approach utilizing an array of semi-quantitative tools for prioritizing actions, including, information developed from assessments that describe causes of impairment, biological benefits associated with classes of restoration actions, as well as estimated costs. We developed a decision support system score sheet to obtain a relative “score” for each planned project. Criteria used in deriving a project score were drafted to reflect the values embodied in our restoration goal statement as well as the constraints of implementing projects within the target watersheds. The criteria included consideration of multiple species that benefit from restoration, the degree to which restoration actions address causal processes, uncertainty associated with project actions and habitat/biological responses, and how the project accommodates local socioeconomic goals. The project scores were useful in differentiating projects and facilitating implementation and monitoring at different temporal and spatial scales within the constraints dictated by landownership. The resulting list of projects will be used to negotiate agreements for implementation, and serves as the core of on-the-ground work that is identified in this proposal.
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Layers
Legend
Name (Identifier) Area Type Source for Limiting Factor Information
Type of Location Count
Black Lake-Coeur d'Alene River (170103030202) HUC 6 QHA (Qualitative Habitat Assessment) 1
Lake Creek (170103030401) HUC 6 QHA (Qualitative Habitat Assessment) 1
Coeur d'Alene Lake (170103030406) HUC 6 QHA (Qualitative Habitat Assessment) 4
Alder Creek (170103041003) HUC 6 None
Benewah Creek (170103041102) HUC 6 QHA (Qualitative Habitat Assessment) 1
Pedee Creek-St Joe River (170103041104) HUC 6 QHA (Qualitative Habitat Assessment) 2

Project Deliverable definition: A significant output of a project that often spans multiple years and therefore may be accomplished by multiple contracts and multiple work elements. Contract Deliverables on the other hand are smaller in scope and correspond with an individual work element. Title and describe each Project Deliverable including an estimated budget, start year and end year. Title: A synopsis of the deliverable. For example: Crooked River Barrier and Channel Modification. Deliverable Description: Describe the work required to produce this deliverable in 5000 characters or less. A habitat restoration deliverable will contain a suite of actions to address particular Limiting Factors over time for a specified Geographic area typically not to exceed a species population’s range. Briefly include the methods for implementation, in particular any novel methods you propose to use, including an assessment of factors that may limit success. Do not go into great detail on RM&E Metrics, Indicators, and Methods if you are collecting or analyzing data – later in this proposal you’ll be asked for these details.
Project Deliverables: View instructions
Stream wood additions (DELV-1A)
Add large wood to stream channels to address current, near- and long-term future (50 yr and 150 yr) wood loading deficits identified using the empirical and probabilistic results of the Wood Recruitment Study (Miller et al. 2008) as guidance for implementation. Adding wood to channels is the primary means of increasing wood-related habitat function, including providing habitat diversity, sediment storage, grade control, habitat cover, and connectivity with floodplains (Andrus et al. 1988; Robison and Beschta 1990; Abbe and Montgomery 1996; Buffinton 1998). With regard to rearing habitats in these tributaries, we found that while a low proportion of instream wood formed pools, between 25-40% of all pools were formed by wood. Importantly, other studies have found that wood abundance has a greater influence on pool spacing in steeper channels (2-5% vs. <2%), which are comparable to our tributary streams (Beechie and Sbley 1997). In addition, while some researchers report no increase in pool frequency for wood abundances greater than about 0.4 pieces/m (Montgomery et al. 1995; Beechie and Sibley 1997), our data show no similar saturation in pool abundance at high wood loadings. These data suggest that any future reduction in wood abundance translates directly to a reduction in rearing habitats. Therefore we ranked channel reaches according to their current wood loads and future wood-load sensitivity to riparian management. The highest priority sub-watersheds in Benewah and Lake creeks encompass 12,298 m and 9,538 m of stream channel, respectively, with instream wood loads that fall below our interim criteria of 6m3/100m. These channels are not likely to meet these targets given model projections of natural wood recruitment over time.

Projects have been scoped to address these needs such that 70% of tributary stream habitats meet our management criteria over time. Implementing the entire suite of projects will treat 8,609 m of channel in Benewah Creek and 6,677 m of channel in Lake Creek. Within the constraints of staffing and budget, we propose to implement this work over a 5-10 year period at an average rate of 1500 m/year. The success of implementing this deliverable is predicated on negotiating projects with the numerous landowners with interest in these areas. There are 10 landowners in Benewah Creek (3 control >50% of the project area) and 19 landowners in Lake Creek (4 control >50% of the project area). Stream reaches where treatments cannot be negotiated with landowners may serve as permanent untreated control sites in the experimental design for determining effectiveness.
Types of Work:

Riparian management (DELV-1B)
Plant and manage riparian vegetation to increase forest canopy cover over stream channels and provide near- and long-term (50 year and 150 year) natural recruitment of CWD to meet criteria for instream wood loading using the empirical and probabilistic results of the Wood Recruitment Study (Miller et al. 2008) as guidance for implementation. The highest priority sub-watersheds in Benewah and Lake creeks encompass 9,700 m and 8,443 m, respectively, of stream adjacent riparian areas that either lack significant woody vegetation or have impaired recruitment processes as predicted by model projections of wood recruitment over time under prevailing management practices. Much of these areas overlap with areas described in DELV-1A, where instream wood is currently lacking. Without treatment, these riparian areas are not likely to meet our management criteria of >75% canopy cover in 2nd order tributaries, and the ability of riparian habitats to meet interim instream wood loading criteria of 6m3/100m over 150 years.

Projects have been scoped to address these needs such that 70% of tributary stream habitats meet our management criteria over time. Implementing the entire suite of projects will treat 6,790 m of channel in Benewah Creek and 5,910 m of channel in Lake Creek. Within the constraints of staffing and budget, we propose to implement these treatments over a 5-10 year period at an average rate of 1,270 m of channel and adjacent riparian habitats annually. In areas lacking stream adjacent forest, treatments will consist of planting tree species suited to site conditions and capable of supplying CWD to the channel in the future. In areas with established stream adjacent forest, we anticipate negotiating conservation easements with landowners that effectively allow for increased stocking density and/or growth of riparian trees to provide natural recruitment of CWD to stream channels over time sufficient to meet our management criteria. The success of this work is predicated on negotiating projects with the numerous landowners with interest in these areas. There are 6 landowners in Benewah Creek (4 control >84% of the project area) and 9 landowners in Lake Creek (4 control >72% of the project area). Stream reaches where treatments cannot be negotiated with landowners may serve as permanent control sites in the experimental design.
Types of Work:

Reduce sediment delivery from roads (DELV-1C)
Priorities outlined in a project prioritization exercise along with information gathered in the 2008 Road and Fish Passage Assessment (Middel et al., 2009) will guide the restoration efforts in targeting road segments that are actively eroding and delivering sediment to important spawning and rearing habitat. Road segments were ranked according to attention priority codes for selected environmental indicators. They were also ranked according to predicted sediment delivery. Road segments that were identified as having high sediment delivery as well as road segments that are hydrologically connected were designated as high priority. Best management practices (BMP) will be applied to address these road condition priorities through implementation measures completed by a combination of project staff and subcontractors. These BMPs include installation of cross drains, culvert replacement, reducing road gradient, increasing vegetation on cutslopes, and improving road surface conditions by resurfacing with gravel. Road construction guidelines outlined in the Coeur d'Alene Tribe Forest Road Management Policy (Coeur d'Alene Tribe 2002) will be followed in completing road work. The WARSEM program (Dube et al. 2004) will be used to model BMP effectiveness for projects completed throughout the contract period.

Projects have been scoped to help reduce sediment delivery to streams from roads. Collectively, these projects will meet management criteria for reducing sediment delivery from hydrologically connected road segments by 75%. All culverts that have a high risk of failure will also be treated. Implementing the entire suite of projects will treat 14,035 m of roads in Benewah Creek and 5,129 m of roads in Lake Creek. Within the constraints of staffing and budget, we propose to implement this work over a 5-10 year period with the goal of annually resurfacing 1200 m of forest roads, improving drainage for 716 m of hydrologically connected road, and replacing 2 non-fish bearing culverts that are in need of repair. The success of implementing this deliverable is predicated on negotiating projects with the numerous landowners with interest in these areas. There are 6 landowners in Benewah Creek (2 control >50% of the project area) and 9 landowners in Lake Creek (1 controls >50% of the project area). Projects will be coordinated with efforts to improve fish passage (DELV-1D).
Types of Work:

Remove or Retrofit Fish Barriers (DELV-1D)
Priorities outlined in a project prioritization exercise along with information gathered in the 2008 Road and Fish Passage Assessment (Middel et al., 2009) will guide the restoration efforts in targeting fish barriers. Fish barriers were ranked high, moderate or low according to stream order, presence of downstream barriers, type of passage barrier (e.g., juvenile vs. adult), and the amount of upstream habitat less than 20% gradient. Further field investigations were completed by Tribal staff in summer 2009 and 2010 to refine these rankings to take into account fish distribution in previously unsurveyed stream segments. Design for the new replacement crossings will follow methods outlined by Hotchkiss and Frei (2007). Natural stream channel simulation will be the preferred method in developing designs. The new crossings will be designed to pass all life stages of cutthroat trout. These new stream crossings will be designed and installed by project staff, with assistance from subcontractors in some instances. Road construction guidelines outlined in the Coeur d'Alene Tribe Forest Road Management Policy (Coeur d'Alene Tribe 2002) will be used in completing road work.

Projects have been scoped to treat all of the high priority culverts blocking passage for both juvenile and adult cutthroat trout. Implementing the entire suite of projects will open up access to 19,011 m of channel in Benewah Creek and 9,309 m of channel in Lake Creek. Within the constraints of staffing and budget, we propose to implement this work over a 5-10 year period at an average rate of 3 projects a year. The success of implementing this deliverable is predicated on negotiating projects with the numerous landowners with interest in these areas. There are 5 landowners in Benewah Creek with 17 high priority barriers and 4 landowners in Lake Creek with 9 high priority barriers. Projects will be coordinated with efforts to reduce sediment delivery to 2nd and 3rd order streams (DELV-1C).
Types of Work:

Abundance of adfluvial cutthroat trout spawners (DELV-2A)
Abundance of adult adfluvial cutthroat trout that return to spawn in tributaries of Lake and Benewah creek watersheds will be derived annually. The tributaries to which adfluvial adults return in Lake and Benewah watersheds will also be examined to assess the spatial distribution of spawners.
Types of Work:

Adfluvial cutthroat trout juvenile production (DELV-2B)
Juvenile outmigrant abundance will be annually estimated for adfluvial cutthroat trout in Lake and Benewah creek watersheds. The age classes that comprise outmigration abundance estimates will also be derived from age structure datasets. Outmigrant per spawner productivity ratios will be derived from consecutive age-class apportioned outmigrant abundances in combination with spawner abundance estimates and adult sex ratios estimated at migrant traps.
Types of Work:

In-lake survival rates of adfluvial cutthroat trout (DELV-2C)
Juvenile to adult return rates for adfluvial cutthroat trout in Lake and Benewah creeks will be derived from outmigrating juvenile cohorts for which enough years have elapsed to account for variable lake residence times. Repeat spawner return rates and frequency of return for adfluvial adult cutthroat trout will also be derived for Lake and Benewah creeks.
Types of Work:

Indices of cutthroat trout abundance in stream reaches (DELV-2D)
Indices of cutthroat trout abundance in tributary and mainstem habitats in Lake, Benewah, Alder, and Evans creek watersheds will be annually computed employing single pass electroshocking at established 200 ft index sites. These annually computed indices will be used to track trends in cutthroat trout abundance at various spatial scales within watersheds, and to evaluate changes in the spatial distribution of cutthroat trout within mainstem and tributary reaches.
Types of Work:
Work Class Work Elements
Research, Monitoring, and Evaluation + Data Management
157. Collect/Generate/Validate Field and Lab Data
160. Create/Manage/Maintain Database
162. Analyze/Interpret Data

Growth rates of cutthroat trout (DELV-2E)
Scales from cutthroat trout will be annually collected during migrant trapping periods and summer surveys in stream habitats, and then periodically analyzed to evaluate changes in age distribution and in growth rates during periods of stream and lake residence.
Types of Work:

Stream survival rates of cutthroat trout (DELV-2F)
Mark-recapture methodologies using PIT-tagged fish will be employed in tributary habitats in both Benewah and Lake creek watersheds to estimate in-stream survival rates of various age classes of cutthroat trout. Survival rates will be compared across tributaries, over time, and among different life-history strategies to examine linkages between survival, movement, and habitat quality.
Types of Work:

Movements among critical habitats as expression of life-history strategies in cutthroat trout (DELV-2G)
PIT-tagging of fish in tributary habitats and both active and passive interrogation methods will be used to examine seasonal movements of cutthroat trout, especially with regards to their use of restored mainstem reaches (e.g., upper Benewah mainstem) as overwintering habitat, and to examine the contribution by various tributaries to adfluvial production within each of Benewah and Lake Creek watersheds.
Types of Work:

Habitat response to implemented restoration measures in sub-watersheds (DELV-3A)
Because we have completed an exercise to prioritize sub-watersheds within Benewah and Lake creeks based on a suite of process-based impairments (i.e., riparian, channel, sediment, flood hydrology, water quality) and expected fish responses, our approach to restoration is to implement the full suite of projects identified in each of the priority sub-watersheds within the constraints dictated by landownership. We expect that projected restoration measures will be implemented over the course of several years (5-10 years) in a pulsed approach within prioritized sub-watersheds given the expected constraints in the development of landowner agreements to perform the work and in the time required to execute the projects in the field. As such, we intend to use a hierarchical staircase statistical design (modified BACI design) to evaluate the effects of implemented restoration actions on habitat attributes (Nelle et al. 2006; Jordan 2006). This type of a design allows treatments to be staggered in time within the designated treated area (i.e., staircase). In addition, another advantage to this approach is that certain spatial units may serve as temporary controls until they are treated at a later date. Thus, replicate sites will be selected and habitat attributes that have been linked to the quality of salmonid habitat will be repeatedly measured at a specified time interval, with a subset of these sites treated through time and the remaining sites serving as untreated controls for the entire period. A general staircase statistical model can thus have the form:

Y_it = u_i + T_t + R_it + e_it;
where,
u_i = mean response of site i in the absence of treatment (i.e., accounts for unique properties of the site),
T_t = effect of time shared among all sites independent of treatment,
R_it = effect of treatment on site i at time t,
e_it = residual term describing unique response of site i at time t independent of treatment.

Our restoration approach also intends to proceed with action implementation at nested spatial scales (i.e., hierarchical). For example, a series of site-specific projects (e.g., large wood additions) will be implemented in a pulsed manner across reaches within a treated sub-watershed with a proximate paired sub-watershed serving as a temporary control. However, the control sub-watershed will also likely be treated in the future in a similar pulsed manner with the intent to effect changes in habitat attributes at an even larger spatial scale. Thus, these analytical approaches are intended to be used to examine changes in certain habitat attributes at the reach scale within sub-watersheds for the evaluation of the effectiveness of site-specific actions, and to examine changes in other habitat attributes at the sub-watershed scale for the evaluation of the effectiveness of actions that address deficiencies at larger spatial scales. Treatment/control pairings in the Benewah watershed are West Fork Benewah and South Fork Benewh, Windfall and Whitetail, and SchoolHouse and Hodgson Creek. Treatment/control pairings in the Lake Creek watershed are Bozard and West Fork Lake/Upper Lake, and West Fork Lake and Upper Lake in the Lake Creek watershed. We propose to maintain an untreated tributary to serve as a more permanent control as restoration proceeds within each of our watersheds.
Types of Work:
Work Class Work Elements
Research, Monitoring, and Evaluation + Data Management
157. Collect/Generate/Validate Field and Lab Data
160. Create/Manage/Maintain Database
162. Analyze/Interpret Data

Habitat response to restoration in mainstem/floodplain reaches in upper Benewah (DELV-3B)
We will continue to conduct post-treatment monitoring in reaches of the upper Benewah mainstem that have received riparian and in-stream restoration treatments over the period from 2004 to 2012. Monitoring approaches will consist of: (1) habitat surveys that track trends in riparian and in-channel physical attributes; (2) surveys that examine stability of beaver dam complexes; (3) thermal heterogeneity surveys; (4) tracking ambient stream temperatures; and (5) groundwater well monitoring.

For the first monitoring approach, habitat metrics will be calculated at survey sites distributed across restored reaches in the upper Benewah mainstem and used in statistical trend analyses to evaluate if habitat attributes are being maintained at or approaching desired conditions and benchmarks. Currently, eight habitat sites are being revisited on a 4-year cycle to evaluate directional trends. Trend analyses for each metric may be examined using the following statistical model:

Y_ijk = µ + w_j (ß + t_i) + b_j + a_i + c_ij; where:
w_j = constant representing the jth year
µ,ß = fixed intercept and slope
t_i = random effect for the trend for site i
b_j = random effect for jth year (coherent temporal variability)
a_i = random effect for site variability
c_ij= site*year interaction (ephemeral temporal variability; note that because multiple observations are not collected at a given site at a specific time period, both the interaction and residual are subsumed under this term).

For the second monitoring approach, beaver dams and associated inundated stream habitat in the upper Benewah mainstem will be annually monitored to evaluate the effectiveness of restoration techniques in increasing the overall stability of beaver dam complexes. Analytical approaches will entail using ANOVA model structures (e.g., Before-After analysis), with dams serving as replicates, to evaluate how metrics measured at dams (e.g., seasonal change in height) differ among years before and after implemented restoration measures.

For the third monitoring approach, thermal heterogeneity will be periodically monitored in restored reaches of the upper Benewah mainstem to evaluate the persistence of detectable cool-water refugia in deep water habitats. Analyses will include evaluating whether the magnitude of reach-specific thermal heterogeneity (i.e., temperature difference between surface and bottom of deep pools) changes over years.

For the fourth monitoring approach, temperature loggers located in tailpool/riffle habitats that are distributed across restored mainstem reaches will continuously log ambient stream temperatures over critical (e.g., summer) rearing periods for cutthroat trout. Temperature indices (e.g., mean and maximum daily temperature, percent time exceeding established thresholds) will be computed annually and evaluated over years to examine if the relationship between stream temperature indices and air temperatures (collected at proximate locations in the upper Benewah watershed) change over time. Given that we have air and temperature loggers similarly distributed in mainstem locations in the upper Lake Creek watershed, relationships between stream and air temperatures in the upper Benewah watershed will be compared to those generated in the Lake Creek watershed, which has received minimal mainstem restoration treatments.

For the fifth monitoring approach, groundwater wells in floodplain habitats in the upper Benewah mainstem will be repeatedly sampled throughout each year of monitoring to evaluate the response of groundwater levels to restoration measures that were implemented to re-connect the main channel with the floodplain. Analyses will include using repeated measures ANOVA models to evaluate mean changes in groundwater elevation over years post-implementation.
Types of Work:
Work Class Work Elements
Research, Monitoring, and Evaluation + Data Management
157. Collect/Generate/Validate Field and Lab Data
160. Create/Manage/Maintain Database
162. Analyze/Interpret Data

Biological response to implemented restoration measures in sub-watersheds (DELV-3C)
Metrics associated with the abundance and productivity of cutthroat trout in stream rearing habitats will be evaluated at hierarchical spatial scales and compared/contrasted among treated and control reaches as sub-watersheds are incrementally restored. We intend to conduct probabilistically distributed capture/recapture PIT-tagging efforts for stream-rearing cutthroat trout at reaches that co-occur with the probabilistically distributed habitat surveys (i.e., pairing habitat and cutthroat trout monitoring) in both treated and control sub-watersheds. Sampling at the reach scale should inform linkages between the improvements in physical habitat attributes resulting from implemented site-specific restoration actions and localized responses in biological metrics, such as the rearing densities of cutthroat trout. Probabilistically distributed fish surveys at the reach scale within sub-watersheds will also include those reaches upstream of fish barriers (i.e., impassable culverts) that are currently unoccupied by stream-dwelling cutthroat trout. Our monitoring approach will thus be able to track temporal changes in stream densities within these reaches as indicators of colonization after barriers have been addressed.

As additional reaches within prioritized sub-watershed are incrementally treated in a pulsed manner, biological responses, such as survival rates, to the collective improvements in physical habitat at the sub-watershed scale will be compared with ‘temporary control’ sub-watersheds using the data collected from PIT-tagged fish. Eventually, as sub-watersheds that had served as temporary controls are treated under our experimental restoration approach, biological responses will be ‘rolled up’ to larger spatial scales and will be examined as changes in the outmigrant productivity at the watershed scale. Thus, our monitoring approach intends to track progressively greater biological responses at larger spatial scales.

At the reach scale, indices of abundance of cutthroat trout in treated and control reaches are intended to be analyzed using the modified BACI staircase statistical approach that was described in Deliverable 3A. At the sub-watershed scale, survival rates of cutthroat trout are intended to be analyzed using mark-recapture models that incorporate both active recaptures of PIT-tagged fish (e.g., stream surveys and migrant traps) and passive recaptures obtained from fixed PIT-tag interrogation stations (see Protocol for ‘Stream surveys to evaluate productivity, movements, and life-history diversity of cutthroat trout in watersheds of the Coeur d’Alene Basin’). At the watershed scale, outmigrant productivity will be evaluated at migrant traps located downriver of all sub-watersheds that are projected for treatment.
Types of Work:

Implementation and evaluation of measures to suppress brook trout (DELV-4A)
Suppression methodologies will be annually employed in the upper Benewah wateshed to maintain brook trout abundance at a manageable level that comports with benchmark values described in Objective 4. Suppression measures will include removing fish with trapping and electroshocking techniques, and installing temporary barriers to inhibit access to spawning reaches.
Types of Work:

Consumptive impact of northern pike and smallmouth bass on cutthroat trout (DELV-4B)
Bioenergetic models will be employed, using data collected over the previous two years on population demographics and dietary habitats of northern pike and smallmouth bass, to estimate the biomass and numbers of cutthroat trout annually consumed in Lake Coeur d'Alene by both predators. Modeling simulations (e.g., Beverton-Holt yield model) will be conducted to project the prospects for various managment scenarios (e.g., regulation changes, fish removals) to influence the dynamics of both piscivores and the survival rates of cutthroat trout.
Types of Work:
Work Class Work Elements
Research, Monitoring, and Evaluation + Data Management
162. Analyze/Interpret Data

Implementation of measures to address impacts of non-native fish on in-lake survival of cutthroat trout (DELV-4C)
Contingent on the findings of the study conducted to assess the consumptive impact of northern pike and smallmouth bass on cutthroat trout in Lake Coeur d'Alene, alternative strategies will be devised for addressing the low juvenile-to-adult return rates of adfluvial cutthroat trout. Given that either one or both of the examined predators are substantially impacting survival of cutthroat trout, we will evaluate the feasibility and likelihood of success of implementing alternative management strategies to suppress impacts. Strategies would be developed in collaboration with co-managers in the Basin and would likely include either an aggressive removal program and/or regulation changes that were informed by simulation modeling excercises (e.g., Beverton-Holt yield per recruit models). Standardized monitoring strategies would also be developed in concert with the selected management actions to inform the effectiveness of the action under an adaptive management paradigm. For example, if northern pike are determined to have a significant impact, we would most likely implement a monitoring strategy that is consistent with the SPIN protocol developed collaboratively by the Kalispel Tribe and Washington Department of Fish and Wildlife to monitor demographics of northern pike in the Pend Oreille River. Given that neither northern pike nor smallmouth bass were found to be a significant predator on cutthroat trout, other alternatives will be evaluated to examine the low in-lake survival rates. These would likely include assessing the predatory impact of other introduced fishes, such as Chinook, or evaluating the linkages between in-lake growth rates of cutthroat trout and posited competitive interactions with introduced fishes.
Types of Work:

Develop and Coordinate Natural Resources and STEM Education Programs (DELV-5A)
Program staff will implement several activities in support of the deliverable to develop and coordinate Natural Resources and Science, Technology, Engineering and Mathematics (STEM) Education Programs locally. These include:

Success Center After School Program at Lakeside Elementary - Natural resource/culturally based enrichment activities are done after school hours for the Success Center After School Program on a bi-weekly basis reaching up to 60 students at each session throughout the school year. For example, a live raptor education program was presented as an ending to our raptor unit recently.

The Coeur d’Alene Tribe Early Childhood Learning Center (ECLC) - Natural resource/culturally based enrichment activities are done with students during school hours for children of ages 3-4 in 3 separate classrooms, 3 Mondays per month, reaching up to 56 students.

Rock n’ the Rez Youth Camp - A yearly event where science and culturally relevant activities are done with approximately 200 students as they rotate between three camps over a three-week period during the summer.

Water-Awareness Week - This event is held annually on the second week of May with an estimated 5 schools participating and a combined 252 student participants and allows students the opportunity to rotate through informational stations with opportunities to see how Tribal Natural Resources Programs trap and tag fish, age and measure trees, monitor water quality, identify plants, address erosion issues, and many other engaging activities.

Water Potato Day - This is an annual 3 day event that includes approximately 11 different schools pre-K through college and extends an open invitation to the public with approximately 305 scheduled participants and approximately 35 members of the public. Participants are invited to rotate between informational stations that include Coeur d’Alene language activities, the opportunity to learn about and sample native foods, learn about traditional tools and dig water potatoes (a traditional food source for the Coeur d’Alene Tribe found in wetland habitats).

Summer Youth Internships - We annually hire 6-8 summer youth to assist Fisheries Program staff for six weeks. Students are tasked with assisting staff with installation and monitoring of fish traps, conducting annual census of fish populations, monitoring stream habitat, planning a fishing derby and assisting with culture week events and other duties as assigned.

The Fishing Derby- This is an annual public event that involves the summer youth in stocking the tribal trout ponds and purchasing prizes for participants in the fishing competition. The estimated number of participants is 75 – 100 members from the public.

Trout in the Classroom - This project will be held in conjunction with the Lakeside Elementary 4th grade classes. This project will involve an estimated 32 4th graders and 2 teachers and will also be shared with the other students in the school. Program staff will assist teachers in the purchase and setup of a coldwater fish tank and assist in raising salmonid fry to release as juveniles in isolated trout ponds maintained by the Fisheries Program. We will offer assistance and enrichment activities throughout the project.

American Indian Science and Engineering Society (AISES) Pre-college Program - This program works to increase the representation of native youth in the STEM fields via secondary education. This club will meet monthly and will allow students the opportunity to participate in a middle school knowledge bowl and high school science fair, career fair, national conference, college campus tours and scholarship/internship opportunities.
Types of Work:
Work Class Work Elements
Planning and Coordination
99. Outreach and Education
191. Watershed Coordination

Coordinate Community Education and Outreach Activities (DELV-5B)
Program staff will implement several activities in support of the deliverable to coordinate community education and outreach activities. These include:

Watershed Wrap Newsletter - A newsletter highlighting natural resources management activities, monitoring results, events and programs will be published at least bi-annually. The newsletter is direct mailed to 1200 readers and distributed locally at license vendors, stores and other venues.

Tribal newsletter Council Fires - Periodic articles detailing program activities especially pertinent to the Tribal membership are submitted for publication in this newsletter.

Educational brouchures/Tribal website - Staff will develop additional education information relevant to program activities for direct mailing to interested and affected parties as well as maintain an updated website.

Hangman Creek Student Project - Students will be included in a camas restoration project that will provide on-the-ground opportunities in the restoration, planting, and harvesting of camas. The project will culminate in a community camas bake and celebration where an estimated 150 community members will be invited to attend.

Celebrating Salish Native Storytelling Conference - Up to 15 youth will participate in an annual storytelling workshop that provides opportunities for immersing them in the Coeur d’Alene language.

Family Fun/Teen Night – Educational booths and interactive natural resources based games are featured at events conducted within the local community several times each year. Public participation is estimated at 250 attendees.

Earth Day Sustainability Fair - An educational booth is manned by project staff each year at the local Earth Day Fair with an estimated 100 participants.
Types of Work:
Work Class Work Elements
Planning and Coordination
99. Outreach and Education
191. Watershed Coordination

Unassigned Work Elements from Locations (UAWE)
Placeholder deliverable for locations with work elements assigned that are not assigned to any deliverable
Types of Work:


Objective: Improve Stream Habitats (OBJ-1)

Project Deliverables How the project deliverables help meet this objective*

Stream wood additions (DELV-1A) Implementation of stream wood additions as planned meets objective criteria C1: 70% of available habitat to meet CWD loading criteria of 6m3/100m and objective criteria H2: Increase the frequency of overbank flows (=1.5-2yr flood) in incised tributary/mainstem reaches.

Riparian management (DELV-1B) Implementation of riparian management as planned meets objective criteria R1: 75% canopy cover in 2nd order tributaries; and R2: 70% of stream reaches with ability to meet interim instream wood loading criteria of 6m3/100m over 150 years.

Reduce sediment delivery from roads (DELV-1C) Implementation of forest road projects as planned meets objective criteria S1: Reduce sediment delivery by 75% from hydrologically connected road segments; S2: Treat all culverts with high risk of failure; and H1: Reduce length of hydrologically connected road segments to achieve a criteria of less than 0.2 mi/sq. mi. at the sub-watershed scale;

Remove or Retrofit Fish Barriers (DELV-1D) Implementation of fish passage projects as planned meets objective criteria C2: Treat all culverts blocking adult passage and other high/mod priority culverts on a case by case basis.


Objective: Track Status and Trends in Westslope Cutthroat Trout Demographics and Population Structure (OBJ-2)

Project Deliverables How the project deliverables help meet this objective*

Abundance of adfluvial cutthroat trout spawners (DELV-2A) Adult abundance is a high priority high-level indicator that permits an evaluation of the status and trend of adfluvial westslope cutthroat trout in our monitored watersheds within the Basin.

Adfluvial cutthroat trout juvenile production (DELV-2B) Obtaining estimates of outmigrating juvenile production will enable estimates of juveniles per spawner which is a high level indicator of the productivity of wild fish populations. Annual outmigrant production estimates will permit the evaluation of the trend in this high-level indicator over time.

In-lake survival rates of adfluvial cutthroat trout (DELV-2C) Obtaining estimates of juvenile to first time spawner return rate for consecutive outmigrating juvenile cohorts and estimates of repeat spawner return rates for adults will allow us to track trends in in-lake survival of both juvenile and adult cutthroat trout. In-lake survival rates, notably for juveniles, may be the most influential vital rate in determining the productivity of adfluvial cutthroat trout and consequently is vital in understanding overall trends in population abundance. Similar rates have been defined as a high priority high level indicator for steelhead and salmon populations (i.e., SAR), and consequently we are considering juvenile to adult return rates in migratory cutthroat trout to be equally important.

Indices of cutthroat trout abundance in stream reaches (DELV-2D) Obtaining annual estimates that index the abundance of cutthroat trout across stream reaches will allow us to track trends in the relative abundance and spatial distribution of populations in our target watersheds.

Growth rates of cutthroat trout (DELV-2E) Examining changes in the growth rates of cutthroat trout during periods of stream and lake residence will allow us to track growth as an index of the productivity of adfluvial cutthroat trout populations in both types of rearing habitats within the Coeur d'Alene Basin.

Stream survival rates of cutthroat trout (DELV-2F) Examining survival rates during stream residence will allow us to obtain a better understanding of population demographics of cutthroat trout throughout their life-cycle. Life-cycle mortality, which is an indicator of population productivity, is considered to be a high priority, high level indicator.

Movements among critical habitats as expression of life-history strategies in cutthroat trout (DELV-2G) Examining the seasonal in-stream movements of cutthroat trout among critical rearing habitats will provide a better understanding of the connectivity of sub-populations within watersheds (i.e., population structure). Examining seasonal movements may also permit a better understanding of reaches used by trout as overwintering habitat, and how overwintering reaches (e.g., restored habitat in upper Benewah mainstem) may provide habitat that is critical for the overall productivity of cutthroat trout. Examining the contribution of various tributaries to adfluvial production will permit a better understanding of the diversity and structure of adfluvial populations within the Lake and Benewah watersheds.


Objective: Evaluate Effectiveness of Habitat Restoration (OBJ-3)

Project Deliverables How the project deliverables help meet this objective*

Habitat response to implemented restoration measures in sub-watersheds (DELV-3A) This deliverable employs probabilistically distributed habitat surveys and modified BACI statistical designs to evaluate how riparian and in-stream channel improvements induce changes in physical habitat attributes (e.g., pool frequency and depth, riparian cover, large woody debris loadings, substrate size) that have been linked to the quality of salmonid habitat. Furthermore, our monitoring efforts intend to pair salmonid sampling/tagging efforts with habitat surveys at the reach scale in both treated and control sub-watersheds to inform linkages between changes in habitat conditions and responses in salmonid metrics (e.g., density). Therefore, this deliverable intends to evaluate the effectiveness of restoration measures in improving salmonid habitat, and, in combination with Deliverable 3C, intends to evaluate the effectiveness of restoration measures in eliciting responses in cutthroat trout.

Habitat response to restoration in mainstem/floodplain reaches in upper Benewah (DELV-3B) Habitat attributes linked to the quality of cutthroat trout habitat (e.g., presence and persistence of deep pools) are monitored in the low-gradient, unconstrained floodplain reach in the upper Benewah mainstem. Tracking whether benchmark performace measures for these attributes are maintained or achieved over time post-restoration will allow us to evaluate the long-term success in the effectiveness of our mainstem restoration measures. Two of the primary objectives of the various treatments that have been applied in upper Benewah mainstem reaches are: (1) to improve connectivity between the channel and the adjacent floodplain to restore functional riparian processes; and (2) to provide more suitable rearing temperatures during critical periods for cutthroat trout. Long-term monitoring of groundwater levels in floodplain habitats as an indicator of connectivity and water storage should permit an evaluation of the effectiveness of these restoration measures. In reference to the second objective, we have documented the creation of thermal refugia in deep restored pools as a short-term response to the effectiveness of our restoration actions. Continued monitoring will allow us to track the persistence of the spatial extent and magnitude of these refugia under variable temperature and hydrological regimes to evaluate the long-term effectiveness of our restoration measures in achieving this objective. In a similar vein, long-term monitoring of ambient stream temperatures in restored mainstem reaches will allow us to evaluate the linkages between our restoration measures and changes in stream temperature. Our actions are expected to improve water storage in floodplain habitats and promote the recovery of riparian plant communities. In turn, water contributions from floodplain habitats during baseflow periods and increased canopy cover should decrease stream temperatures.

Biological response to implemented restoration measures in sub-watersheds (DELV-3C) One of the objectives of habitat restoration is to increase the quality or suitability of rearing environments for cutthroat trout. Tracking trends in density indices at the localized reach scale and survival rates at the sub-watershed scale using a hierarchical treatment and control approach will permit an evaluation of whether cutthroat trout populations are responding to restoration measures implemented to improve the quality of rearing habitats during stream residence. As more reaches within treated sub-watersheds and as more sub-watersheds are incrementally restored, we should expect to see an increase in the outmigrant production of juvenile cutthroat trout within our adfluvial watersheds. Juvenile outmigrant production is thus another indicator of the effectiveness of habitat restoration at an aggregated larger spatial scale. The colonization of previously blocked unoccupied tributary reaches within a watershed is another indicator of the effectiveness of specific habitat actions that address and fix migratory barriers (e.g., impassable culverts). Examining the movements of cutthroat trout from tributary to restored mainstem reaches during overwintering periods, and the differential survival that may exist between those individuals that express this behavior and those that remain in tributaries throughout the winter could be another indicator of the effectiveness of habitat restoration in improving population productivity.


Objective: Address Impacts from Non-native Introduced Fishes (OBJ-4)

Project Deliverables How the project deliverables help meet this objective*

Implementation and evaluation of measures to suppress brook trout (DELV-4A) Realizing the documented negative impacts of non-native brook trout on cutthroat trout, suppression measures are implemented annually to control the abundance of brook trout in the upper Benewah watershed. Data are also collected to examine the numerical and reproductive compensatory response of brook trout to our removal efforts to evaluate the effectiveness of the suppression program.

Consumptive impact of northern pike and smallmouth bass on cutthroat trout (DELV-4B) A study will be completed in 2013 that will provide estimates of the annual consumption of cutthroat trout by northern pike and smallmouth bass in Lake Coeur d'Alene. These estimates will permit a quantitative understanding of the impacts of both non-native predators on adfluvial cutthroat trout populations and will likely guide management efforts to address these impacts.

Implementation of measures to address impacts of non-native fish on in-lake survival of cutthroat trout (DELV-4C) Contingent on the findings of the northern pike and smallmouth bass consumption study, various alternatives will be explored to be considered for implementation in Lake Coeur d'Alene to manage non-native fish assemblages that impact adfluvial cutthroat trout populations.


Objective: Increase Coordination and Participation Among Stakeholders (OBJ-5)

Project Deliverables How the project deliverables help meet this objective*

Develop and Coordinate Natural Resources and STEM Education Programs (DELV-5A) This deliverable helps meets the benchmark for education and outreach by involving more than 1000 students and teachers annually in natural resource and science, technology, engineering and math activities that are made available to the Reservation community. These programs are especially geared toward facilitating increased enrollment of Tribal members in natural resources management related degree programs at the post-secondary level.

Coordinate Community Education and Outreach Activities (DELV-5B) This deliverable helps meets the benchmark for education and outreach by reaching more than 4000 people annually through distributing program related information and directly involving community members in events.


*This section was not available on proposals submitted prior to 9/1/2011

RM&E Protocol Deliverable Method Name and Citation
Trap adfluvial adult westslope cutthroat trout in Lake and Benewah Creeks of CDA Basin v1.0
Stream habitat surveys to track changes in habitat characteristics due to restoration efforts v1.0
Stream and Air Temperature monitoring in project watersheds to track trends in temperature due to restoration v1.0
Groundwater monitoring in project watersheds to track changes due to restoration v1.0
Beaver dam surveys to evaluate the changes in beaver dam characteristics due to restoration v1.0
Sample salmonids in rearing habitats of target watersheds in the CDA Basin v1.0
EXPIRED: Stream surveys to evaluate productivity, movements, and life-history diversity of cutthroat trout in watersheds of the Coeur d'Alene Basin v1.0
A study of thermal heterogeneity of stream reaches to evalute changes due to restoration efforts v1.0
EXPIRED: Evaluating effectiveness of non-native brook trout suppression program in the Benewah watershed v1.0

Project Deliverable Start End Budget
Stream wood additions (DELV-1A) 2013 2017 $1,235,734
Riparian management (DELV-1B) 2013 2017 $1,183,683
Reduce sediment delivery from roads (DELV-1C) 2013 2017 $905,877
Remove or Retrofit Fish Barriers (DELV-1D) 2013 2017 $1,211,778
Abundance of adfluvial cutthroat trout spawners (DELV-2A) 2013 2017 $293,787
Adfluvial cutthroat trout juvenile production (DELV-2B) 2013 2017 $293,787
In-lake survival rates of adfluvial cutthroat trout (DELV-2C) 2013 2017 $110,306
Indices of cutthroat trout abundance in stream reaches (DELV-2D) 2013 2017 $277,720
Growth rates of cutthroat trout (DELV-2E) 2013 2017 $116,641
Stream survival rates of cutthroat trout (DELV-2F) 2013 2017 $499,703
Movements among critical habitats as expression of life-history strategies in cutthroat trout (DELV-2G) 2013 2017 $419,585
Habitat response to implemented restoration measures in sub-watersheds (DELV-3A) 2013 2017 $381,204
Habitat response to restoration in mainstem/floodplain reaches in upper Benewah (DELV-3B) 2013 2017 $315,795
Biological response to implemented restoration measures in sub-watersheds (DELV-3C) 2013 2017 $227,181
Implementation and evaluation of measures to suppress brook trout (DELV-4A) 2013 2017 $223,594
Consumptive impact of northern pike and smallmouth bass on cutthroat trout (DELV-4B) 2013 2013 $52,564
Implementation of measures to address impacts of non-native fish on in-lake survival of cutthroat trout (DELV-4C) 2014 2017 $692,224
Develop and Coordinate Natural Resources and STEM Education Programs (DELV-5A) 2013 2017 $805,557
Coordinate Community Education and Outreach Activities (DELV-5B) 2013 2017 $604,558
Unassigned Work Elements from Locations (UAWE) 2012 2012 $0
Total $9,851,278
Requested Budget by Fiscal Year

Fiscal Year Proposal Budget Limit Actual Request Explanation of amount above FY2012
2013 $1,775,697 The requested FY 2013 budget is greater than the BPA expected budget of FY2012 + 0.90% inflation. These differences are accounted for in part by the addition of 0.5 FTE needed to complete M&amp;amp;E work associated with proposed effectiveness monitoring, as well as necessary predator management efforts in Coeur d&#39;Alene Lake that are not part of the current scope of work. The annual increase in expected personnel costs also generally exceeds the stated rate of inflation (0.90%).
2014 $1,964,476 FY2014 budget request increases $217,550 over FY2013, primarily to accomodate the expected costs of negotiating conservation easements associated with implementing proposed riparian management prescriptions to benefit stream habitats.
2015 $2,000,164
2016 $2,054,461
2017 $2,056,480
Total $0 $9,851,278
Item Notes FY 2013 FY 2014 FY 2015 FY 2016 FY 2017
Personnel $978,024 $1,030,576 $1,064,996 $1,117,762 $1,117,762
Travel $0 $0 $0 $0 $0
Prof. Meetings & Training $19,396 $19,396 $19,396 $19,396 $19,396
Vehicles $47,565 $49,944 $49,944 $52,321 $52,321
Facilities/Equipment (See explanation below) $86,565 $44,248 $38,033 $29,332 $29,332
Rent/Utilities $14,530 $15,257 $15,257 $15,983 $15,983
Capital Equipment $8,700 $0 $8,700 $0 $0
Overhead/Indirect Calculated at 25% $335,696 $342,276 $347,674 $360,273 $360,677
Other Includes supplies and subcontracts $285,221 $462,779 $456,164 $459,394 $461,009
PIT Tags $0 $0 $0 $0 $0
Total $1,775,697 $1,964,476 $2,000,164 $2,054,461 $2,056,480
Major Facilities and Equipment explanation:
The staff associated with this fisheries project is housed in Plummer, Idaho in the Tribe’s Felix Aripa "Shi'ttsin" Building, which also houses Wildlife, Water Resources, and Lake Management staff. The office accommodations facilitate the interaction and collaboration of natural resources staff to the greatest extent possible. The facility was constructed in 2004, and each office is connected to the high-speed local area network (LAN) maintained by the Coeur d’Alene Tribe Information Technology Department. The Tribe’s geographical information system (GIS) lab has high-end GIS computer systems that support project efforts and most staff have ArcMap software available at their work stations. A secure shop facility and adjacent fenced parking area houses all capital and non-expendable field equipment used by this project. The Coeur d’Alene Tribe owns most of the heavy equipment needed to implement the proposed habitat restoration treatments, including excavators, bulldozer, dumptrucks, skid steer, tractor, etc.

Source / Organization Fiscal Year Proposed Amount Type Description
US Fish and Wildlife Service (USFWS) 2013 $104,713 Cash The Tribe is seeking funds from USFWS to cost-share ongoing work in Coeur d'Alene Lake to quantify the predatory impact of non-native fishes. The likelihood of funding is good.
Bonneville Environmental Foundation 2013 $15,000 Cash BEF provides funding to the Tribe in support of restoration and monitoring activities conducted in the Benewah Creek watershed under a 10-year grant agreement through 2015.
Bonneville Environmental Foundation 2014 $15,000 Cash BEF provides funding to the Tribe in support of restoration and monitoring activities conducted in the Benewah Creek watershed under a 10-year grant agreement through 2015.
Bonneville Environmental Foundation 2015 $15,000 Cash BEF provides funding to the Tribe in support of restoration and monitoring activities conducted in the Benewah Creek watershed under a 10-year grant agreement through 2015.
Bonneville Power Administration 2013 $10,000 Cash BPA awarded the Tribe a $10,000 Tribal Financial Assistance grant for the period 9/2011-9/2013 to develop and implement education components to accompany restoration efforts.
Avista Corporation 2013 $200,000 Cash Avista funding will directly contribute to meeting project benchmarks for improving habitats, through purchase, protection and restoration of wetlands required under the FERC license conditons.
Avista Corporation 2014 $200,000 Cash Avista funding will directly contribute to meeting project benchmarks for improving habitats, through purchase, protection and restoration of wetlands required under the FERC license conditons.
Avista Corporation 2015 $200,000 Cash Avista funding will directly contribute to meeting project benchmarks for improving habitats, through purchase, protection and restoration of wetlands required under the FERC license conditons.
Avista Corporation 2016 $200,000 Cash Avista funding will directly contribute to meeting project benchmarks for improving habitats, through purchase, protection and restoration of wetlands required under the FERC license conditons.
Avista Corporation 2017 $200,000 Cash Avista funding will directly contribute to meeting project benchmarks for improving habitats, through purchase, protection and restoration of wetlands required under the FERC license conditons.
US Environmental Protection Agency (EPA) 2013 $40,000 In-Kind EPA provides funding directly to the Tribe to conduct in-lake and tributary water quality monitoring as well as funds 319 non-point source pollution control programs.
Coeur D'Alene Tribe 2013 $150,000 In-Kind The Coeur d'Alene Tribe has pledged monies to monitor water quality in Coeur d'Alene Lake under the Lake Management Plan adopted by the Tribe and the State of Idaho.
Coeur D'Alene Tribe 2014 $150,000 In-Kind The Coeur d'Alene Tribe has pledged monies to monitor water quality in Coeur d'Alene Lake under the Lake Management Plan adopted by the Tribe and the State of Idaho.
Coeur D'Alene Tribe 2015 $150,000 In-Kind The Coeur d'Alene Tribe has pledged monies to monitor water quality in Coeur d'Alene Lake under the Lake Management Plan adopted by the Tribe and the State of Idaho.
Coeur D'Alene Tribe 2016 $150,000 In-Kind The Coeur d'Alene Tribe has pledged monies to monitor water quality in Coeur d'Alene Lake under the Lake Management Plan adopted by the Tribe and the State of Idaho.
Coeur D'Alene Tribe 2017 $150,000 In-Kind The Coeur d'Alene Tribe has pledged monies to monitor water quality in Coeur d'Alene Lake under the Lake Management Plan adopted by the Tribe and the State of Idaho.
Coeur D'Alene Tribe 2015 $200,000 In-Kind The Commission is likely to sponsor projects addressing water quality and fish habitat as they implement basin-wide restoration actions linked to EPA superfund remedial actions.
Coeur D'Alene Tribe 2015 $200,000 In-Kind The Tribe is likely to sponsor projects addressing water quality and fish habitat as they implement basin-wide restoration actions linked to EPA superfund remedial actions.
Coeur D'Alene Tribe 2016 $200,000 In-Kind The Commission is likely to sponsor projects addressing water quality and fish habitat as they implement basin-wide restoration actions linked to EPA superfund remedial actions.
Coeur D'Alene Tribe 2017 $200,000 In-Kind The Commission is likely to sponsor projects addressing water quality and fish habitat as they implement basin-wide restoration actions linked to EPA superfund remedial actions.
US Bureau of Indian Affairs (BIA) 2014 $80,000 Cash We have submitted a request to BIA to provide funding in support of proposed lake predator work. Requested funds would be used to purchase an electrofishing boat for predator control and monitoring.

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U.S. Department of Energy, Bonneville Power Administration, Portland, OR. Vitale, A.J., S.A. Hallock, J.A. Firehammer, R.L. Peters, and D.W. Chess. 2008. Implementation of fisheries enhancement opportunities on the Coeur d’Alene Reservation. 2006 Annual Report. Project No. 1990-044-00. U.S. Department of Energy, Bonneville Power Administration, Portland, OR. Vitale, A.J. and J.A. Firehammer. 2009. Benewah Creek model watershed project effectiveness monitoring of restoration actions. Progress report submitted to the Bonneville Environmental Foundation, BEF Grant Number 05-322-W, Portland, OR. Washington Department of Fish and Wildlife. 2000. Fish Passage Barrier and Surface Water Diversion Screening Assessment and Prioritization Manual. Westbrook, C. J., D. J. Cooper, and B. W. Baker. 2006. Beaver dams and overbank floods influence groundwater-surface water interactions of a Rocky Mountain riparian area. Water Resources Research, 42, W06404, doi:10.1029/2005WR004560 Wyckoff, S.N. 1937. Forest statistics for Kootenai and Benewah counties, Idaho. USFS, Northern Rocky Mountain Forest and Range Experiment Station: Missoula, Montana. Young, M.K., E.A. Mace, E.T. Ziegler and E.K. Sutherland. 2006. Characterizing and contrasting instream and riparian coarse wood in western Montana basis. Forest Ecology and Management 226: 26-40.

Review: Resident Fish, Regional Coordination, and Data Management Category Review

Independent Scientific Review Panel Assessment

Assessment Number: 1990-044-00-ISRP-20120215
Project: 1990-044-00 - Coeur D'Alene Reservation Fisheries Habitat
Review: Resident Fish, Regional Coordination, and Data Management Category Review
Proposal Number: RESCAT-1990-044-00
Completed Date: 4/13/2012
Final Round ISRP Date: 4/3/2012
Final Round ISRP Rating: Meets Scientific Review Criteria
Final Round ISRP Comment:
First Round ISRP Date: 2/8/2012
First Round ISRP Rating: Meets Scientific Review Criteria
First Round ISRP Comment:

This proposal is truly transformational from previous work by the Coeur d’Alene Tribe. They are taking the approach that subbasin planning envisioned. This is good solid work that needs to be published; some of the principal investigators have a record of this. The CDA Fisheries project is a model for an approach for the problem. Additional sampling work may allow investigators to find out some important aspects of native trout life histories. Some telemetry work will be informative. The ISRP compliments Angelo Vitale and John Firehammer for the clear presentations and for their efforts to combine wildlife and fisheries activities, in Benewah Creek as well as in the Hangman watershed.

Overall, this proposal represents excellent planning, analysis, synthesis, and progress toward the goal of restoring adfluvial westslope cutthroat trout to CDA Lake and its tributaries. The factors affecting these fish are many, ranging from large-scale landscape-level habitat processes to non-native species invasions. The investigators have done a very good job of studying each of these, or developing plans to do so, and integrating and prioritizing restoration actions to optimize management. Likewise, the outreach and education activities planned are helping local landowners understand and support the projects.

Several aspects of the analysis of cutthroat trout survival and production might be improved by using state-of-the-art methods and software (Program MARK), if these are not already planned. Likewise, further consideration of brook trout invasions at a riverscape scale could yield important insights in their control.

The proposal was very long (61 pages), which detracted from the review; however, many of the project findings were summarized in the proposal which is good. A number of appropriate metrics are being collected along with the habitat restoration effort, for example, adfluvial juveniles per spawner and juvenile-to-spawner survival rates. The ultimate success of the program for adfluvial trout may hinge on the ability to identify and control factors limiting survival from the juvenile-to-adult stage, such as predation by non-native fishes. The overall annual cost of the project is high relative to the eventual native fish population size, but the project is diverse with many activities and areas of focus. 

1. Purpose: Significance to Regional Programs, Technical Background, and Objectives

This is an ongoing project designed to address the highest priority objective in the Coeur d’Alene Subbasin: to protect and restore remaining stocks of native resident westslope cutthroat trout (Oncorhynchus clarki lewisi) to ensure their continued existence in the basin and provide harvestable surpluses of naturally reproducing adfluvial adult fish in Lake Coeur d’Alene and in Lake and Benewah creeks, with stable or increasing population trends for resident life history types in Evans and Alder creeks.

This is a well-designed and well-presented proposal that systematically documents linkages to regional planning documents such as the Coeur d’Alene Subbasin Plan, past ISAB and ISRP reviews and guiding documents, and to regional strategies for recovering tributary habitats. The investigators provide excellent and detailed information about how their project relates to the Fish and Wildlife Program, and seven other programs in the Columbia River Basin. The work is clearly well integrated with current plans.

Technical background in the proposal is thorough and systematic, leading logically to the proposed and ongoing objectives and actions. The proposal clearly states that the main goal is to increase production and survival of adfluvial and resident westslope cutthroat trout (WCT) to make up for lost production of anadromous salmonids. The technical background needed to understand the myriad factors that affect these WCT is almost always very well detailed. Some earlier proposals focused on using artificial production to increase westslope cutthroat trout in Benewah Creek and in Lake Coeur d’Alene without adequately considering and attempting to address limiting factors. In contrast, this proposal describes known and potential factors that appear to be inhibiting cutthroat trout production. These include sediment input from past land use practices along Benewah Creek, lack of coarse woody debris, barriers to fish movement and migrations, and competition with non-native brook trout.

Strategies, objectives, and actions flow logically from this discussion and analysis. The five stated main objectives appear sound, clear, and measurable, though several will be very challenging to accomplish because of the spatial scale over which WCT complete their life cycle in this stream-lake ecosystem. Objectives include improving stream habitat, reconnecting old floodplain meadow sections, evaluation of habitat restoration actions, and reduce brook trout abundance and densities. Objectives seem well matched to the discussion of limiting factors in the proposal. The project objectives are tiered to the Intermountain Province Objectives 2A1-2A4 and to the Columbia River Basin Goal 2A that addresses resident fish substitution for anadromous fish losses (Intermountain Province Subbasin Plan 2004). Project objectives are: 1) improve stream habitats; 2) track trends in salmonid demographics and population structure; 3) evaluate effectiveness of habitat restoration; 4) address impacts from non-native introduced fishes; and 5) increase cooperation and coordination among stakeholders.

Several emerging limiting factors, such as predation by non-native fishes, are objectives of the proposal. Other project objectives, such as increasing habitat complexity and connectivity, are well integrated to help ameliorate the impending changes in climate variability. No formal modeling was done, however, and would likely be premature.

The proposal also includes objectives for understanding the lacustrine portion of the adfluvial westslope cutthroat trout life history and the impact that non-native northern pike may be having on the survival of WSCT, particularly during their first year outmigration into the shallow southern littoral zone of Lake CDA where northern pike are abundant. This portion of the proposal seems the least well developed at this time; however, the approach and proposed actions are again, logical and deserving of investigation.

2. History: Accomplishments, Results, and Adaptive Management (ISRP Review of Results)

History: The CDA approach to management of Benewah Creek and its cutthroat trout has evolved over time and now appears to be solidly grounded in modern ecological and restoration science. A fundamental goal of the Coeur d’Alene Tribe Fisheries Program is to identify restoration and enhancement needs and opportunities in areas that have the greatest potential to improve habitat and translate into positive biological responses to recover depressed native cutthroat trout populations.

The approach attempts to translate watershed analyses, resource inventories and assessments and monitoring results into the management actions needed to achieve project goals. The recent project history reflects a shift from opportunistic implementation of restoration projects to a more systematic approach for prioritizing management actions consistent with the refugia approach described by Reeves et al (1995) and Frissell and Bayles (1996) and a multispecies, analytical approach (Beechie and Bolton 1999). The approach attempts to protect the best first and expand restoration outward from areas of relatively intact habitats and populations. The multispecies analytical approach has been implemented as more detailed knowledge of factors limiting recovery have been developed. Actions focus on suites of landscape processes considered necessary to conserve multiple species.

Accomplishments: The ISRP was impressed by the careful formal planning and prioritization of restoration developed in this proposal. The investigators take a highly integrated approach to understand the historical habitat conditions, and ecosystem disturbances and processes that create and sustain habitat for WCT in this basin. They integrate knowledge of ecohydrology and channel-floodplain-riparian vegetation linkages in their work, which is uncommon. From this, they develop goals for instream habitat restoration that are in line with these natural processes, such as encouraging "ecosystem engineering" by beavers to create suitable habitat for WCT. All of this is a result of accomplishments in past data collection, analysis, and further research and synthesis based on these results, which appears to have been very well done, overall.

Second, it appears that the investigators have fairly recently realized that they will need a comprehensive mark-recapture program using PIT tags to develop robust estimates of production and survival of WCT by life stage, in order to understand which suite of factors are limiting their numbers and vital rates, and where in the river-lake system these bottlenecks occur. As such, we wondered whether employing a sophisticated tool like Program MARK would be most useful (see website of Dr. Gary White, Colorado State University), which can be used to estimate capture probabilities, abundance, survival, movement, and parameters like temporary emigration of fish using state-of-the-art analysis and testing methods.

Third, we were impressed with the approach the investigators are using to consider effects of non-native species at riverscape and lakescape scales. Clearly, like WCT, brook trout in streams also will use habitat in a spatially dynamic way, as will northern pike and smallmouth bass in CDA Lake. Understanding these dynamics may allow intercepting the non-native fish using traps or other gear at key locations where they spawn, or past which they move, leading to more cost-effective control methods in this situation where complete removal is likely impossible.

Results: This section features a nicely described logical sequence from restoration objectives (Table 1), moving through prioritizations (Table 2), into watershed functions and processes, which are tied to specific assessment techniques and procedures (Table 3). Tables 4 and 5 work through site-specific restoration actions and priorities. This is a very nice and defensible approach. For example, since 2004, 6.8 km of habitats have been made accessible through removal of passage barriers, 457 m of stream habitats have been treated with additions of coarse wood, and 6.2 km of degraded mainstem and tributary habitats and 20.3 hectares of associated floodplain have been treated through large-scale channel restoration. Although we have yet to see direct evidence of a significant response by cutthroat trout, we observed more pronounced positive trajectories in abundance in tributaries of Benewah Creek compared to the watersheds that have received less management intervention in recent years.

Investigators are working to understand the entire life history of adfluvial westslope cutthroat trout in Benewah and Lake creeks. Given that recent PIT-tag data suggest that adfluvial juvenile-to-spawner return rates are exceptionally low in their monitored systems, they are placing a stronger emphasis on understanding the processes and mechanisms that are impacting the suitability of rearing habitats in Lake Coeur d’Alene. As an initial step toward this management goal, a collaborative study with the University of Idaho is currently underway to better understand whether predation by northern pike and smallmouth bass is a predominant mechanism regulating juvenile in-lake survival rates.

It would be good to know what percentage of available degraded versus adequate habitat has been addressed by these activities since 2004, as a means to evaluate how far the effort has progressed. The collection of recruits per spawner (R/S) data and the change in objectives based on the low survival of juvenile to adult stage is good. The proposal has embraced the ISAB recommendation to use an Intensive Watershed Management approach, which involves use of treatment control sites to better identify factors affecting the resident fish.

Adaptive Management: This project is well conceived and appears well executed. It is rich in data slides and tables, which demonstrate results from the last 7 years that feed directly into the adaptive management section. The changes made in light of new information were clearly described, including 1) developing a new understanding about how stream-riparian habitat is formed and inundated during floods, 2) adjusting removal strategies for non-native brook trout to account for their patchy distribution and vulnerability in spawning habitat, and 3) developing a new study to address potential for non-native fishes in Lake CDA to be an important limiting factor. The proposal and study are grounded in fisheries, conservation, and stream restoration literature and emphasizes data collection through monitoring in order to evaluate progress and modify, if needed, project goals and actions. This is the essence of adaptive management.

Response to past ISRP and Council comments and recommendations: The authors have apparently responded to a main comment about the potential for non-native fishes in CDA Lake to reduce WCT survival. The goal of testing these effects, in part through a graduate student project, and the actions proposed based on these findings including developing new hypotheses, were clearly laid out and logical. The authors have also paid close attention to ISRP and ISAB studies and recommendations about habitat restoration, landscape and watershed scale activities, and the role of monitoring in adaptive management as evidenced by the proposal itself. 

ISRP Retrospective Evaluation of Results

The CDA approach to management of Benewah Creek and its cutthroat trout has evolved over time and now appears to be solidly grounded in modern ecological and restoration science. The CDA Fisheries Habitat Project has considerable monitoring, evaluation and reporting associated with it. Results show progress toward overall project goals. The system in place also sets the stage well for the use of adaptive management. A fundamental goal of the Coeur d’Alene Tribe Fisheries Program is to identify restoration and enhancement needs and opportunities in areas that have the greatest potential to improve habitat and translate into positive biological responses to recover depressed native cutthroat trout populations.

The approach attempts to translate watershed analyses, resource inventories and assessments and monitoring results into the management actions needed to achieve project goals. The recent project history reflects a shift from opportunistic implementation of restoration projects to a more systematic approach for prioritizing management actions consistent with a refugia approach and a multispecies, analytical approach. The approach first protects the best then expands restoration outward into other habitats and populations. Actions are focused on suites of landscape processes considered necessary to conserve multiple species.

The project shows evidence of careful formal planning and prioritization of restoration activities using an integrated approach to understand the historical habitat conditions, and ecosystem disturbances and processes that create and sustain habitat for WCT in this basin. All of this is a result of accomplishments in past data collection, analysis, and further research and synthesis based on these results, which appears to have been very well done, overall.

3. Project Relationships, Emerging Limiting Factors, and Tailored Questions for Type of Work (hatchery, RME, tagging)

Very well done, as described above. The Additional Relationships described in the proposal show that this project is well integrated into other mitigation and watershed projects, leading to synergistic and "value added" effects of coordination among projects. With respect to limiting factors, the sponsors recognize the importance of the low survival of the adfluvial juvenile to adult stage and are attempting to identify factors such as predation in the lake. Predation may constrain population increase.

4. Deliverables, Work Elements, Metrics, and Methods

Deliverable Description: The deliverables were clearly laid out, overall. Those most clear were for 1) Habitat restoration, 3A&B) Responses to habitat restoration, 4) Non-native species control, and 5) Community outreach and education. The deliverables associated with 2) Abundance and production of WCT were less clear in some cases and might be expanded or considered further as outlined below. The project's recent (2005-present) deliverable status has an average completion rate of 94% (170 of 180 deliverables). Incomplete deliverables have generally been carried forward into subsequent contracts and have been completed in nearly all instances.

Study Design: The study design was quite comprehensive, sophisticated, and well planned overall. We were very impressed with how well integrated the many components were. Specific points to consider that might improve the study results are:

A. As described above, estimates of spawner abundance, juvenile production, survival in the lake, juvenile abundance, survival rates in streams, and movements among habitat types might be more fully integrated using a design that could be analyzed in Program MARK as one large integrated analysis. In fact, data from two systems (Benewah Creek and Lake Creek) might be analyzed together, even if processes differ between them, and allow data to be "shared" across systems, increasing power to detect important effects (see Saunders et al. 2011 NAJFM for such an analysis of stream trout abundance estimates). 

B. We were unclear about whether rainbow trout are native in this watershed, and if not, what the status of rainbow trout invasion is. Could climate change potentially trigger new invasions? Work by Clint Muhlfeld in Glacier National Park seems to be showing the potential danger of such invasions, and how management might be used to reduce them.

C. Untreated controls are very useful, but it is not clear that they were selected at random. This is very difficult in such a large-scale study. However, one should describe how they were selected, how potential bias was reduced, and acknowledge that the comparison is useful but not a true treatment-control comparison. Several books like those by Brian Manly may help couch these comparisons in appropriate terms.

D. We had some concerns about the use of single-pass electrofishing to estimate CPUE across stream sites.

The deliverable is: DELV-2D: Indices of cutthroat trout abundance in stream reaches: Indices of cutthroat trout abundance in tributary and mainstem habitats in Lake, Benewah, Alder, and Evans creek watersheds will be annually computed employing single pass electroshocking at established 200 ft index sites. These annually computed indices will be used to track trends in cutthroat trout abundance at various spatial scales within watersheds, and to evaluate changes in the spatial distribution of cutthroat trout within mainstem and tributary reaches.

The authors justify the use of single-pass sampling based on a high correlation between the number of WCT captured on the first pass and the number of marked fish released the previous day after one-pass sampling. They state that the number estimated the second day from multiple-pass sampling underestimated the "true abundance" of marked fish released, and that this is likely due to biases inherent in depletion sampling described in two papers (Peterson et al. 2004; Rosenberger and Dunham 2005). 

Given that no block nets were used to enclose the marked fish, might the lower number estimated the second day be at least partly due to emigration of marked fish after their release the first day? Saunders et al. (2011, NAJFM) showed that depletion estimates can be accurate, based on a similar study design using fences, and a more complete analysis.

More importantly, the use of single-pass estimates as CPUE rests on the critical assumption that capture probabilities are equal across sites, years, and different crews, which may not be strictly true, or even similar. Thus, if single-pass estimates are to be used to reduce work load and therefore increase the spatial distribution of sampling, which is a good thing in this case, then it would seem wise to validate these capture probabilities on a systematic or probabilistic design. Otherwise, a large amount of data will likely not stand the rigors of scientific review, and hence conclusions could be discounted by others.

One practical point is that it appears that this deliverable currently requires only about 3% of the total funding for the project. Therefore, if the data to be generated are considered critical to the decisions made, then more funding and emphasis could be placed on generating estimates that can stand the rigor of review.

E. Under Deliverable 2E, we wondered whether analysis of age from scales could underestimate true ages. If so, it seems wise to validate these ages for a subsample of fishes using otoliths. Again, conclusions should rest on data that have been validated. In high-altitude streams, cutthroat trout may not grow enough the first year to create an annulus, for example. Likewise, older fish may resorb edges of scales, making annuli difficult to distinguish, and also leading to underestimates.

F. The Priority rankings in Table 6 are identical to the Management Sensitivity rankings, so it was unclear what new information is gained beyond this? Neither fish abundance nor wood abundance seems to influence priority.

G. In Table 7, it was unclear on what estimator these abundance estimates are based, and what is the level of confidence for the interval?

H. Is visibility sufficient to use snorkeling to determine whether WCT are using deep restored pools during summer?

I. We agree that an important hypothesis to test is whether adfluvial CT life histories can resist BK invasion better than isolated resident ones. If the study can be designed to measure this, the results would be very important, and should be published.

J. Along with the ideas being considered for control of brook trout, would it be cost effective to run several weirs to intercept moving brook trout, which tend to move as runoff is coming down, and for spawning (see Gowan and Fausch 1996 and Peterson and Fausch 2003, both in CJFAS)?

K. As support for increasing the complexity and resiliency of habitats to ameliorate climate change, and the potential for brook trout to be influenced more strongly than WCT, see the new paper by Wenger et al. (2011; Proceedings National Academy of Sciences). These findings are reported there. 4a. Specific comments on protocols and methods described in MonitoringMethods.org: See comments above.

4a. Specific comments on protocols and methods described in MonitoringMethods.org:

See comments above.

Modified by Dal Marsters on 4/13/2012 12:31:33 PM.
Documentation Links:
Proponent Response: